PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g020190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 172aa    MW: 20092.8 Da    PI: 9.4655
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g020190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer79.54.2e-25353258
     ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    ++++Y+eC++NhAa+lG++a+DGC+E+ +s      +++  CaACgCHR++HRr ++
  Csa17g020190.1  3 SSCVYRECMRNHAAKLGSYAIDGCREYSQS------VTGDLCAACGCHRSYHRRVEV 53
                    5789************************99......7788**************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-20450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-18652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.122751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-1795168IPR009057Homeodomain-like
SuperFamilySSF466894.84E-8101167IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-30109168IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCREYS QSVTGDLCAA CGCHRSYHRR VEVISSAQIS  60
HTRFPFMSLR RVKQLARLKW KTAEQRKQDV DEEEEDTEET STEEKITVQR RSKSKFTAEQ  120
REAMKDFAAK IGWTLKDKRA IREEIRDFCQ GIGVTRYHFK TWVNNNKKLY H*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g020190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069171e-176AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865231e-176AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039421e-176BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050271e-176BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026841e-176CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476535.11e-126PREDICTED: zinc-finger homeodomain protein 14-like
SwissprotQ9LQW34e-95ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLR0I8E91e-100R0I8E9_9BRAS; Uncharacterized protein
STRINGXP_010476535.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.17e-96homeobox protein 32