PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g018630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 358aa MW: 40805.4 Da PI: 5.8913 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.1 | 1.5e-26 | 184 | 248 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek.........AtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a+++LGG++ AtPk+i+elmk++gLt+++vkSHLQkYRl+ Csa17g018630.1 184 KQRRCWSSQLHRRFLNALQHLGGPHGeffdifymiATPKQIRELMKIDGLTNDEVKSHLQKYRLH 248 79*********************984444444455****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.86E-14 | 183 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 183 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-23 | 184 | 248 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MIKNLSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKREMPEMT 60 TENVYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE ELDDEHGNHD PDNDSEDKNT 120 KSDWLKSVQL WNQPDPLLPK EERLQQEMME TVKRDHENMR KDPMVNGGEG RKREAEKDVG 180 GGRKQRRCWS SQLHRRFLNA LQHLGGPHGE FFDIFYMIAT PKQIRELMKI DGLTNDEVKS 240 HLQKYRLHTR RPRQTVPNNE NSQTQHFVVV GGLWVPQPDY STGKTTGGVT TSSTTTTTGI 300 YGAMAAPPPP QWPSHSNFRP SIIAEEGSGS HSEEVVVVRC SSPAMSSSTR NHYVKNH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g018630.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367336 | 0.0 | AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. | |||
GenBank | AY124865 | 0.0 | AY124865.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495195.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X1 | ||||
Swissprot | Q9FX67 | 0.0 | HRS1_ARATH; Transcription factor HRS1 | ||||
TrEMBL | D7KQE4 | 0.0 | D7KQE4_ARALL; Myb family transcription factor | ||||
STRING | XP_010495195.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13508 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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