PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g013260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 584aa    MW: 62457.8 Da    PI: 9.5934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g013260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08198224127
                      TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktI 27 
                      r++W+ eEde l  av++ G g+W+tI
   Csa17g013260.1 198 RKKWSVEEDEELFAAVRRCGEGNWATI 224
                      789***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.667193237IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-8195238IPR009057Homeodomain-like
SuperFamilySSF466891.42E-8195239IPR009057Homeodomain-like
PfamPF002491.1E-5198224IPR001005SANT/Myb domain
CDDcd116601.74E-10199240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MVKTSIINSK KRFITEGDIA TLLQRYDVKT ILRMLQEMAY YAELKMDWNE LVKKTTTGIT  60
NAREYQLLWR HLSYREPLLP MEDVAQPLDD DSDLECELEA SPAVSHEASV EAIAHVKVMA  120
ASYVPSESDI LNDTVEAPLT INIPYVRPEG TQEPSESPWS SRGMNITFPV CLQKATSTTE  180
GMNGNGSASS SMAFRRKRKK WSVEEDEELF AAVRRCGEGN WATIIRGDFR GDRTASQLSQ  240
LSEVSVDIHI LETLVRWALI RKRRDTSTSV RQSGVQRTNE QIAVNHALSL ALGNRLPTKE  300
NSVATSKSRV VRKTTASSIS RLDVMATANS VAVAACVGGV STAASVPKVE PGKTDSPWPS  360
CGLSVPKVEP GTSVTASSII KAVGPANTLS LANGKLNPVA ASPSSNKRPL MDPRSEGSTM  420
LSASPSLPSE SRIVSNQRVF AASVSATVLQ PEPSGETVTC KPDGGQKEQA RGNGAISLAT  480
IQPNQITSTS SEISRGKQAT QAQSPNLLPR KIPVVKTAIH GATNQKLVNK QSHKTVIPSI  540
SGAGSQFQAK CEVNNKVGPA IKASSGCRKP AEVATMAGTG QGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g013260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475815.10.0PREDICTED: uncharacterized protein LOC104755172
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGXP_010475815.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein