PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g011910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family YABBY
Protein Properties Length: 175aa    MW: 19616.2 Da    PI: 10.1807
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g011910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY206.21.2e-631015024170
           YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvpp 114
                     vsvP++slf++vtvrCGhCt+lls+n+ ++ ++++ +          + ++l+  +++++s v++++  s+s+s++++    sen d+e+pr+pp
  Csa17g011910.1  10 VSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSPTP---------INQDLQPYKQHITSSVTRKDFGSSSRSTNNIsttlSENIDREAPRMPP 95 
                     9****************************999887776.........45555555555555555555444444444433333***********99 PP

           YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Csa17g011910.1  96 -IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 150
                     .9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-5810150IPR006780YABBY protein
SuperFamilySSF470951.03E-795143IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.5E-498144IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
LIKTYINDQV SVPYASLFTL VTVRCGHCTN LLSLNIGVSL HQTSPTPINQ DLQPYKQHIT  60
SSVTRKDFGS SSRSTNNIST TLSENIDREA PRMPPIRPPE KRQRVPSAYN RFIKEEIQRI  120
KACNPEISHR EAFSTAAKNW AHFPHIHFGL KLDGNKKGKQ LDQTVASQKS NGYC*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g011910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475645.11e-121PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB01e-107YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLR0GKG11e-115R0GKG1_9BRAS; Uncharacterized protein
STRINGXP_010475645.11e-121(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-100YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]