PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g011910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | YABBY | ||||||||
Protein Properties | Length: 175aa MW: 19616.2 Da PI: 10.1807 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 206.2 | 1.2e-63 | 10 | 150 | 24 | 170 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvpp 114 vsvP++slf++vtvrCGhCt+lls+n+ ++ ++++ + + ++l+ +++++s v++++ s+s+s++++ sen d+e+pr+pp Csa17g011910.1 10 VSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSPTP---------INQDLQPYKQHITSSVTRKDFGSSSRSTNNIsttlSENIDREAPRMPP 95 9****************************999887776.........45555555555555555555444444444433333***********99 PP YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Csa17g011910.1 96 -IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 150 .9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-58 | 10 | 150 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.03E-7 | 95 | 143 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 98 | 144 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
LIKTYINDQV SVPYASLFTL VTVRCGHCTN LLSLNIGVSL HQTSPTPINQ DLQPYKQHIT 60 SSVTRKDFGS SSRSTNNIST TLSENIDREA PRMPPIRPPE KRQRVPSAYN RFIKEEIQRI 120 KACNPEISHR EAFSTAAKNW AHFPHIHFGL KLDGNKKGKQ LDQTVASQKS NGYC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g011910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 0.0 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475645.1 | 1e-121 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 1e-107 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | R0GKG1 | 1e-115 | R0GKG1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010475645.1 | 1e-121 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-100 | YABBY family protein |
Publications ? help Back to Top | |||
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