PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 249aa MW: 27969.6 Da PI: 5.5354

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g009600.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.5e-14	1	43	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eEd+ll+++++++G ++W++ ++ g+ R++k+c++rw +yl Csa17g009600.1 1 AEEDQLLINYITLHGHPNWRSLPQSAGLLRCGKSCRLRWINYL 43 59***********************99**********97 PP
2	Myb_DNA-binding	46.8	7e-15	49	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Csa17g009600.1 49 RGNFTSLEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 94 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-18	1	50	IPR009057	Homeodomain-like
CDD	cd00167	1.09E-7	1	43	No hit	No description
SMART	SM00717	3.8E-4	1	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.87E-24	1	90	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-11	1	43	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	13.461	1	43	IPR017930	Myb domain
PROSITE profile	PS51294	22.008	44	98	IPR017930	Myb domain
SMART	SM00717	1.7E-12	48	96	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-13	49	94	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-25	51	98	IPR009057	Homeodomain-like
CDD	cd00167	1.44E-8	51	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
AEEDQLLINY ITLHGHPNWR SLPQSAGLLR CGKSCRLRWI NYLRPDIKRG NFTSLEEDTI 60 INLHQILGNR WSAIAAKLPG RTDNEIKNVW HTHLKKRLHQ NQDGDTKETV VTATSTTTTT 120 DAKRPTSPEQ QQQQSSSSGD VSAVTTSGNN NDHISNGNSK DSATSSKDVP PALIDESFWS 180 EVVSMDYNIS GDDHVKNEIK IENWEGSLDR NDNKGYNFSK LYNHDMEFWF DHLTTSPVVG 240 EISDISDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-20	2	98	13	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269\|PubMed:16861809, ECO:0000269\|PubMed:9681014}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g009600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269\|PubMed:9681014}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493437	1e-124	AB493437.1 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180.
GenBank	AY519550	1e-124	AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds.
GenBank	BT025173	1e-124	BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475346.1	0.0	PREDICTED: myb-related protein Myb4-like
Swissprot	Q9LNC9	1e-114	MYB13_ARATH; Transcription factor MYB13
TrEMBL	V4L200	1e-117	V4L200_EUTSA; Uncharacterized protein
STRING	XP_010475346.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	1e-108	myb domain protein 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156]