PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g046530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 495aa    MW: 55175.9 Da    PI: 5.3008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g046530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07137157526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ff++   C++G++C+ +Hg
  Csa16g046530.1 137 MCKFFMQ-QRCRFGSSCRSSHG 157
                     6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.3E-4132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568132159IPR000571Zinc finger, CCCH-type
SMARTSM004431.0E-14294340IPR000467G-patch domain
PfamPF015852.1E-14296339IPR000467G-patch domain
PROSITE profilePS5017413.587296342IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MASEEDKALE DLLDVQLNEQ KESLSAIGEA LASDPFNPEL LSVHEELLQA IKETEEGLFH  60
LKRARLLQEA DIVLNGLSRD AGEHLNELEP EKKDLDGSQC RFRHTDGRWY NGRIIGFEGS  120
DTAKISFLTP TSESMTMCKF FMQQRCRFGS SCRSSHGLDV PLSSLKNYAQ TEWKESMVGS  180
KIWAVSGGKD DIWRKAELES WDDELQVGGI VFRDDGSSAK LGSDAMALSE YAQMTDDDGE  240
EEEENEEGSG DSDSGESISS DYDEESPQGI GFLESTNQPR GVQTDTALFA KWENHTRGIA  300
SKMMASMGYR EGMGLGASGQ GILNPVLVKV LPAKRSLDYA LEHVKNGEGK SEKQKKKRSR  360
GGKRKREKKF AEAARAAKQK EESKPDLFSF INEQIFPRSH EKVSRMESVK KKQNSGPVDR  420
KALVAYQDEI KDLKVELMKL EQMVNRNKKD QVVSDAATKR LNQVRKALAS TLASQAAASN  480
AVEIKEKEKK WLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353368QKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g046530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291890.0AK229189.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-48-E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472500.10.0PREDICTED: zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A087GRV50.0A0A087GRV5_ARAAL; Uncharacterized protein
STRINGXP_010472500.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein