PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 471aa    MW: 52943.6 Da    PI: 6.5108
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-10184225543
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 
                     +  rr+++NReAAr+sR+RKka++++Le+   + ++Le+e +
  Csa16g028670.1 184 RTLRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEEELE 225
                     5679***********************984445566666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-8175230No hitNo description
SMARTSM003382.2E-5180240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266182226IPR004827Basic-leucine zipper domain
PfamPF001701.1E-7183225IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-7184229No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141441.1E-27269342IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEAIDLSPNV TIASSANLHY  60
TTFDTGMDCG GLRERLEVED ECLDTGQLVY QKGTRLVGGG GGEVNGSLEN WCDSVSAMAD  120
NSQHTDTSTD IDTDDKTQVL FLCLLRLNHL LKIRLKDSLN GGHQGMVLAT NCSDQSKVKS  180
SEQRTLRRLA QNREAARKSR LRKKAYVQQL ENSRVRLAQL EEELERVRQQ GSVVESGVTA  240
NHTHLPAGNG VFSFELEYTR WKEEHQRLIN DLRSGVNSQL GDNELRMLVD AVMSHYNEIF  300
RLKGIGTKVD VFHMLSGMWK TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL  360
QQSSQQTEDA LSQGMEALQQ SLLETLSSAS MGPNSSANVA DYMGHMAMPM GKLGTLENFL  420
RQADLLRQQT LQQLHRILTT RQAARAFLVI HDYISRLRAL SSLWLARPRD *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182860.0AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBankBT0085860.0BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470818.10.0PREDICTED: transcription factor PERIANTHIA isoform X1
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLR0I7100.0R0I710_9BRAS; Uncharacterized protein
STRINGXP_010470818.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.10.0bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]