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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa16g023880.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
MYB |
| Protein Properties |
Length: 433aa MW: 48684.5 Da PI: 4.3731 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa16g023880.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.7 | 1e-16 | 74 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl
Csa16g023880.1 74 KGAWTAEEDSLLRQCIEKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 121
79********************************************97 PP
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| 2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 127 | 172 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+gr +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l
Csa16g023880.1 127 KGRLNSDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 172
5777889***************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 433 aa
Download sequence Send
to blast |
MEGSSSGLKK GTWTAKEDSL LKQCIDRYRE GKWHQVPLRA GICYIDVKYL VTYIIVSLQL 60
TNRSMEGSSK GLTKGAWTAE EDSLLRQCIE KYGEGKWHQV PLRAGLNRCR KSCRLRWLNY 120
LKPSIKKGRL NSDEVDLLIR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT HLSKKYEPGC 180
KTKMKKKNII SPPTTTTTVQ KVNVFKPRPR SFTVNKDCSH LNGLPEVDIT PSSNGLIINN 240
VSDDSITFDK DDEKDDFLNI LINEDDMWLE NLLDDSQEAD AVVPEATTNE QGATLAFDVE 300
QLSSIIQEAD AVVPEATTNE QGATLAFDVE QLWSLFDGET FTIEVDIIPS SNGISINNVC 360
DESITFDKDD EKDDFLNILI NEDDMWLENL LDDSQETDAG VPEATTNEQG ATLAFDVEQF 420
WSLFDGETVE LD*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF062915 | 0.0 | AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds. |
| GenBank | AF325124 | 0.0 | AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
New Phytol., 2015. 206(1): p. 422-35
[PMID:25425527] - Li T, et al.
Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
[PMID:25450360] - Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
Phytochemistry, 2015. 111: p. 21-6
[PMID:25659750] - Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
PLoS ONE, 2015. 10(11): p. e0143212
[PMID:26588092] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Li N, et al.
The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
Funct. Integr. Genomics, 2018. 18(3): p. 341-353
[PMID:29372433]
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