PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g018500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 689aa    MW: 72467.3 Da    PI: 9.8483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g018500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-12196240144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEde l+ avk++G g+W++Ia++     Rt+ q+  rw
   Csa16g018500.1 196 RKKWSAEEDEELIAAVKRHGEGSWALIAKEEFeGERTPSQLSQRW 240
                      789*************************99777789999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-15190245IPR009057Homeodomain-like
PROSITE profilePS5129417.035191248IPR017930Myb domain
SuperFamilySSF466891.94E-12192245IPR009057Homeodomain-like
SMARTSM007175.8E-12195246IPR001005SANT/Myb domain
PfamPF002498.5E-10196240IPR001005SANT/Myb domain
CDDcd116601.44E-13197240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MVDKSTNNKK RKEFISEEDI ATLLQRYDTA TILKLLQEMA YYADTKMDWN ELVKKTSTGI  60
TNAREYQLLW RHLAYRDSLL PVEDNAQLLN DDSDMECELE ASPAVSVDVV TEAVAHVKVM  120
AASYVPSESD IPEDSTVEAP MTINIPYGLY RGAQEPSDSY WSSRGMNITF PVSLPKAAEG  180
HNGNGLPSSM APRKRRKKWS AEEDEELIAA VKRHGEGSWA LIAKEEFEGE RTPSQLSQRW  240
GAIKRRCDTS NTSTQTGLQR TEAQMAANRA LSLAVGNRIP AKKLAVALVT ANSVAAAACM  300
SVPKTEPGKN AVSVLVPKVE PVKTPSTASL SRPSGISSAL NAEPVKAASA ASVPRPLGII  360
SVPKAETVKT AASAASLLRP SGIIPAPKAE PVKTATSAAP RPSGIQSAPK AEPVKPAASA  420
ASGPRPGMIL APKAEPLKPV SAASLPRPPG IISAPMAEPV KSAPAASVPR PSNILSAPKA  480
DPVKSVSATV SNTKAFGPSN LRHAVNGSPN HTISLSPSNK PSLMAPLSKG STIQNNSVPP  540
SFASSRLVST QRVPAATLMP QKPSEAALNA FSKPVGVQKE QTQGNRASPL VTTTLPAIKT  600
SPTNSVISTS KVVATKVETP PSLMPKKNQV VDSCTDKSSL DKPPEEESSS TAASPLVVAT  660
AESKSKDEAS NRESQDVAAV TGTRQEEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g018500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470273.10.0PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
TrEMBLA0A178WGD30.0A0A178WGD3_ARATH; Uncharacterized protein
STRINGXP_010470273.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein