PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16204s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 92aa MW: 10568.3 Da PI: 10.8257 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Csa16204s010.1 68 FACRRCGKAFAVKGDWRTHEKNC 90 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 54 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.41E-7 | 54 | 88 | No hit | No description |
PROSITE profile | PS50157 | 8.767 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MHMWGHGSQY RKGPESLRGT QPTGMLRLPC FCCAPGCKNN IDHPRAKPLK DFRTLQTHYK 60 RKHGSRPFAC RRCGKAFAVK GDWRTHEKNC GK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16204s010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006085 | 1e-119 | AC006085.1 Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence. | |||
GenBank | AJ311810 | 1e-119 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). | |||
GenBank | CP002684 | 1e-119 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481105.1 | 2e-63 | PREDICTED: zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 5e-63 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A0D3CG62 | 3e-62 | A0A0D3CG62_BRAOL; Uncharacterized protein | ||||
TrEMBL | D7KHP2 | 5e-62 | D7KHP2_ARALL; Zinc finger protein | ||||
TrEMBL | R0IQE2 | 6e-62 | R0IQE2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2093s0011.1.p | 8e-63 | (Capsella grandiflora) | ||||
STRING | Bo5g081360.1 | 5e-63 | (Brassica oleracea) | ||||
STRING | XP_010481105.1 | 7e-63 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 2e-65 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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