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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa15g044200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
MYB |
Protein Properties |
Length: 319aa MW: 35923.3 Da PI: 6.189 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa15g044200.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd++l+ + + G +W++ ++ g+ R++k+c++rw +yl
Csa15g044200.1 14 RGPWTPEEDQILISFIIKRGHSNWRALPKQAGLLRCGKSCRLRWMNYL 61
89******************************99************97 PP
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2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 103 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l
Csa15g044200.1 103 RGNFTKEEEDAIISLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 148
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MGRAPCCEKM GLKRGPWTPE EDQILISFII KRGHSNWRAL PKQAGLLRCG KSCRLRWMNY 60 LKPDIKRGNF TKEEEDAIIS LHQILGNSCR LRWMNYLKPD IKRGNFTKEE EDAIISLHQI 120 LGNRWSAIAA KLPGRTDNEI KNVWHTHLKK RLEDYQPAKP KTTGNKKKVT KPKSESVISN 180 SNSTRSESEL GNSSNPSGES LFSASPSTSE VSSMTLMSHE GHSNETKMDH QKAGDIISTI 240 DQDCVSFENF GADIDESFWN ETLYSQDDLE VAGLDETTHQ QFQHLGSVDD GMIFDSEMDF 300 WFDVLARTGG EQDLLAGL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK176617 | 1e-177 | AK176617.1 Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-14-I20. |
GenBank | AK176693 | 1e-177 | AK176693.1 Arabidopsis thaliana mRNA for putative myb-related transcription factor, complete cds, clone: RAFL25-23-N24. |
GenBank | AY550296 | 1e-177 | AY550296.1 Arabidopsis thaliana MYB transcription factor (At3g23250) mRNA, complete cds. |
GenBank | BT026046 | 1e-177 | BT026046.1 Arabidopsis thaliana At3g23250 mRNA, complete cds. |
GenBank | Y14207 | 1e-177 | Y14207.1 A.thaliana mRNA for AtMYB15 R2R3-MYB transcription factor. |
Publications
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- Schnaubelt D, et al.
Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana. Plant Cell Environ., 2015. 38(2): p. 266-79 [PMID:24329757] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Ma X, et al.
CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana. Plant Mol. Biol., 2015. 88(3): p. 287-99 [PMID:25948280] - Kim SH, et al.
Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis. Nucleic Acids Res., 2017. 45(11): p. 6613-6627 [PMID:28510716] - Chezem WR,Memon A,Li FS,Weng JK,Clay NK
SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis. Plant Cell, 2017. 29(8): p. 1907-1926 [PMID:28733420] - Pal S, et al.
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]
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