PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g013960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 587aa    MW: 63297.9 Da    PI: 8.6171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g013960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076188210123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  Csa15g013960.1 188 YQCKTCDRTFPSFQALGGHRASH 210
                     9***********99999888887 PP
2zf-C2H212.30.00051267289123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa15g013960.1 267 HECGICGAEFTSGQALGGHMRRH 289
                     78********************9 PP
3zf-C2H212.30.00051449471123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa15g013960.1 449 HECGICGAEFTSGQALGGHMRRH 471
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-12187212IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471188215IPR007087Zinc finger, C2H2
SMARTSM003550.028188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576676.78E-9265289No hitNo description
PfamPF139124.1E-11266291IPR007087Zinc finger, C2H2
SMARTSM003550.047267289IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93267291IPR007087Zinc finger, C2H2
PROSITE patternPS000280269289IPR007087Zinc finger, C2H2
SuperFamilySSF576676.78E-9444471No hitNo description
PfamPF139124.1E-11448473IPR007087Zinc finger, C2H2
SMARTSM003550.047449471IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93449473IPR007087Zinc finger, C2H2
PROSITE patternPS000280451471IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MSNSMSRTNR KYCARAAEAV SAAREQSLIL KGKRTKRQRP QSPIPFSIIP PMSSQEPDAE  60
EESTSLVSKE QNLNDEINNN NNKNDNNTNL INGVTSSSSA SSSSNNNVTL KATIDEEDQD  120
MANCLILLAQ GHSLPHHQPQ QTRQLMISYQ DSGNNNNAYR SSSRRFLETS SSNGTTANGG  180
GRAGYYVYQC KTCDRTFPSF QALGGHRASH KKPKAATGLH SNHDLKKSIY DDPVSLHLNN  240
VVTTTPNNNS NHRSLVVYGK ANNNKVHECG ICGAEFTSGQ ALGGHMRRHR GAVVAAAAAS  300
NPTVAVAATT ATANTALSLS PMSFDQMSDG PVQVPVKRAR SAVVSLDLDL NLPAPEDENR  360
VNGLSLASKQ ENEQEHEQTQ QKKQREEQKA SHKKPKAATG LHSNHDLKKS IYDDPVSLHL  420
NNVVTTTPNN NSNHRSLVVY GKANNNKVHE CGICGAEFTS GQALGGHMRR HRGAVVAAAA  480
ASNPTVAVAA TTATANTALS LSPMSFDQMS DGPVQVPVKR ARSAVVSLDL DLNLPAPEDE  540
NRVNGLSLAS KQENEQEHEQ TQQKKQREEQ KSLVLSSAPT LVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g013960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936080.0AB493608.1 Arabidopsis thaliana At3g10470 mRNA for hypothetical protein, partial cds, clone: RAAt3g10470.
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468098.20.0PREDICTED: zinc finger protein ZAT5-like, partial
TrEMBLR0HSD70.0R0HSD7_9BRAS; Uncharacterized protein
STRINGXP_010468098.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-116C2H2 family protein