PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g005840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 620aa    MW: 68345.2 Da    PI: 5.0652
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g005840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.41.9e-15439477240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+C+C+kskClk+YC+Cfaag +C e C+C+dC+Nk 
  Csa15g005840.1 439 SCKRCKCRKSKCLKLYCDCFAAGLYCVEPCSCQDCFNKP 477
                     589**********************************96 PP
2TCR48.32e-15525563240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +++gCnC+ks Clk+YCeCf  g+ Cs++C+C +CkN+ 
  Csa15g005840.1 525 HTRGCNCRKSGCLKRYCECFTMGVGCSSSCRCMGCKNNI 563
                     889**********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-16438479IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.049439564IPR005172CRC domain
PfamPF036388.4E-11441476IPR005172CRC domain
SMARTSM011143.3E-16524565IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12527562IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDTPEKNRIS AVSFRNFEDS PVFQYINDLS PIEPVKPARP ENISHSLAFT SPSSLFSSPQ  60
LSSSRFSMKR HRSQDLSSPV FLIGETVKNS PDALEAVKIT GLSEEQLNCR PEQLPNVSES  120
KPFKEQISLA IELANSLKHG RDGVDVQMVS SDEEPMDADI EIGSSGGSRE LSDELCTQRN  180
DPIHFDADSE GVLQTEEMEA VSVLGTEKIM FDVDGSQNSE QQIPKITDPR FNSFASEPQQ  240
FSYTVQVAAG APDITLCSSS KVANIDSTAE DEAKEDRGLQ PCRKQQGVRR RCLTFDVGGS  300
HKRIPLRDST NDLSLDLTSI NKAPSPQECL DTRKQDTDGI LPLPLTIGLH LNGLVNPSVS  360
SDRNKNSFKD GRFFPPGPTT FHHNIEDEFS TPVSTKRDLV YSDNKFMEGP ERSLEGECFD  420
QHMATEYRQS FQGLDELGSC KRCKCRKSKC LKLYCDCFAA GLYCVEPCSC QDCFNKPIHE  480
DLVMNTREVI EARNPLAFAP KVVSTSDSAI NLCDENSKTP ASARHTRGCN CRKSGCLKRY  540
CECFTMGVGC SSSCRCMGCK NNICHTNEKC AGESGAVTIN DGAKDNDDHG DASSQNEDTA  600
KRERRNRVLL SSSVAFRSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1744156112120Protein lin-54 homolog
5fd3_B1e-1744156112120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g005840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463971.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLR0HXB60.0R0HXB6_9BRAS; Uncharacterized protein
STRINGXP_010463971.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein