PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa15g002700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 472aa MW: 52087 Da PI: 4.7119 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.5e-35 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+ +++++sws+ +nsfvv++ efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ l++ Csa15g002700.1 25 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQILKS 110 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k Csa15g002700.1 111 IVRRKP 116 ***986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.8E-38 | 19 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.84E-34 | 21 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.0E-57 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MGSICESVPT ANSSTAVMGG SIPPFLSKTY DMVDDPLTDD VVSWSSGNNS FVVWNVPEFA 60 KQFLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKQILKS IVRRKPAQVQ 120 PQQQPQVQHS SVGACVEVGK FGLEEEVDRL QRDKNVLMQE LVRLRQQQQV TEHHLQNVGQ 180 KVHVMEQRQQ QMMSFLAKAV QSPGFLNQFS QQSNDANQHI SESNKKRRLP VEDQKNSGSY 240 GVNGLISRQI VRYQSSMNDA ANTMLQQIQQ MSNSPSHESL SSNHGSFLLG DVPSSNISDN 300 GSSSNGSSGV TLADVSSNPA ASLYPAMKYH DPCETNQVLE TTLPYSQGDL LAPTQVAAAS 360 GGSNLDFVGC EIDNGECLDP IMAVLDGPIE LEDGVINELL PEVQDSFWGQ FLGETPVIGD 420 KDELISGSVD NELIMEHLEL QSSLSNGWSK NQQMNHLTEQ MGLLTSDALR K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-26 | 21 | 114 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-26 | 21 | 114 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-26 | 21 | 114 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00328 | DAP | Transfer from AT3G02990 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa15g002700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT026365 | 0.0 | BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010463737.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Swissprot | Q9SCW5 | 0.0 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | R0HYA0 | 0.0 | R0HYA0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010463737.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02990.1 | 0.0 | heat shock transcription factor A1E |
Publications ? help Back to Top | |||
---|---|---|---|
|