PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15223s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 85aa MW: 9873.44 Da PI: 8.8349 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.5 | 2.3e-13 | 3 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+y d C+FaHg Csa15223s010.1 3 KTELCNKWQETGTCPYDDHCQFAHG 27 9***********************8 PP | |||||||
2 | zf-CCCH | 24.1 | 6.3e-08 | 40 | 65 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ Csa15223s010.1 40 YKTEVCRMVLAGDICPYGHRCHFRHS 65 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.906 | 1 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-7 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-11 | 2 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-17 | 3 | 34 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-10 | 35 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-14 | 35 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.272 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MTKTELCNKW QETGTCPYDD HCQFAHGIKE LRPVIRHPRY KTEVCRMVLA GDICPYGHRC 60 HFRHSLSEQE KLVAAGYKPK SSLKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 3 | 68 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15223s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016447 | 1e-114 | AC016447.5 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence. | |||
GenBank | BT026077 | 1e-114 | BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-114 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ056514 | 1e-114 | DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds. | |||
GenBank | DQ446410 | 1e-114 | DQ446410.1 Arabidopsis thaliana clone pENTR221-At1g68200 zinc finger family protein (At1g68200) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511807.1 | 4e-60 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 6e-58 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A178WL36 | 1e-55 | A0A178WL36_ARATH; Uncharacterized protein | ||||
STRING | XP_010511807.1 | 1e-59 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7287 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-60 | C3H family protein |