PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g053190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 106aa MW: 11534.4 Da PI: 10.2372 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.8e-07 | 22 | 48 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++ tG C+ rCk++H++ Csa14g053190.1 22 PGKPECGYYLITGNCNLKKRCKYHHPK 48 5789*********************96 PP | |||||||
2 | zf-CCCH | 29 | 1.9e-09 | 70 | 93 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++f+r+G Ck G+ CkF H+ Csa14g053190.1 70 QAVCPHFSRFGLCKSGPACKFDHS 93 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.286 | 21 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 21 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-5 | 23 | 48 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 25 | 49 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 67 | 95 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 67 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-7 | 70 | 93 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 72 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MQTIPSLIRG GNMSDKKLPE RPGKPECGYY LITGNCNLKK RCKYHHPKNI IPIEPGLALN 60 DNGLPLRPNQ AVCPHFSRFG LCKSGPACKF DHSTKPSSSS SSARK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g053190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019091487.1 | 8e-63 | PREDICTED: zinc finger CCCH domain-containing protein 13-like | ||||
Swissprot | Q3ECU8 | 8e-42 | C3H13_ARATH; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | R0GT25 | 4e-44 | R0GT25_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306053.1 | 6e-45 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48195.1 | 7e-44 | C3H family protein |