PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g036150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 134aa MW: 14705.6 Da PI: 4.7711 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.3 | 9.8e-09 | 77 | 131 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLp 48 lp+G++F+P+d+e++ +L++kv+++k ++ e +++ +i++++P++Lp Csa14g036150.1 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP 131 799***********9.89*****999956644322..22222333336*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-9 | 67 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.638 | 77 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MSWCDGSDDN YDLNIERVSN IDHPSIQLKD QSQSCVTSGP DSKIIVESPI MITCPSCGHK 60 IHHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID EFIPTLEGEN 120 GICYTHPEKL PGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g036150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086476 | 1e-147 | AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478220.1 | 2e-92 | PREDICTED: NAC domain-containing protein 10 | ||||
Refseq | XP_019099249.1 | 2e-92 | PREDICTED: NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 9e-84 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | R0GQV5 | 3e-88 | R0GQV5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010460643.1 | 8e-93 | (Camelina sativa) | ||||
STRING | XP_010478220.1 | 8e-92 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21083 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 4e-86 | NAC domain containing protein 10 |