PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g017780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 172aa MW: 20128.8 Da PI: 9.6434 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 79.5 | 4.2e-25 | 3 | 53 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y+eC++NhAa+lG++a+DGC+E+ +s +++ CaACgCHR++HRr ++ Csa14g017780.1 3 SSCVYRECMRNHAAKLGSYAIDGCREYSQS------VTGDLCAACGCHRSYHRRVEV 53 5789************************99......7788**************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-20 | 4 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-18 | 6 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 18.122 | 7 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-16 | 7 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-17 | 95 | 168 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-8 | 100 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-30 | 109 | 168 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQSSCVYREC MRNHAAKLGS YAIDGCREYS QSVTGDLCAA CGCHRSYHRR VEVISSAQIS 60 HTRFPFMSLR RVKQLARLKW KTAEQRKEDV NEEEEDTEET STEEKMTVQR RSKSKFTAEQ 120 REAMKDFAAK IGWTLKDKRA IREEIRVFCQ GIGVTRYHFK TWVNNNKKFY H* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g017780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006917 | 0.0 | AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence. | |||
GenBank | AY086523 | 0.0 | AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence. | |||
GenBank | BT003942 | 0.0 | BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | BT005027 | 0.0 | BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010458980.1 | 1e-126 | PREDICTED: zinc-finger homeodomain protein 14 | ||||
Swissprot | Q9LQW3 | 1e-97 | ZHD14_ARATH; Zinc-finger homeodomain protein 14 | ||||
TrEMBL | R0I8E9 | 1e-102 | R0I8E9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010458980.1 | 1e-125 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 2e-98 | homeobox protein 32 |