PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g011610.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 417aa MW: 45538.4 Da PI: 5.5768

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g011610.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4.1e-10	218	266	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Csa14g011610.1 218 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 266 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.27E-11	213	270	No hit	No description
SuperFamily	SSF47459	5.37E-17	213	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	216	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-7	218	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	221	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MGGEGNEGEM GFKHGDDESG ISRVGITPMP PLYAKADPFF SSADWDPVVN GGGGGGFSSS 60 HYHPSMAMDN PGMSCFSHYQ PGSGSGYAAE MPASLLPFGD CGGGQIGHFL GSDKKGESVA 120 RLIRAGESHD DHHQVSDDGG VLGASPVGKR RQPEAESQWN KKAVEEFQED PQRESDQSQK 180 KHKNDQSKET VNKESSQSEE APKENYIHMR ARRGQATNSH SLAERVRREK ISERMRLLQE 240 LVPGCNKITG KAVMLDEIIN YVQSLQQQVE FLSMKLATVN PEINIDIDRI LAKDLLQSRD 300 RNTPTLGLNP FTGFQGTIPN LSTTTNPHYN SLPQTTLESE LQNLYQMGFV SNPSTMSSFS 360 PNGTIPNLST TTNPHYNSLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MGGEGNEGEM GFKHGDDESG ISRVGITPMP PLYAKADPFF SSADWDPVVN GGGGGGFSSS  60
HYHPSMAMDN PGMSCFSHYQ PGSGSGYAAE MPASLLPFGD CGGGQIGHFL GSDKKGESVA  120
RLIRAGESHD DHHQVSDDGG VLGASPVGKR RQPEAESQWN KKAVEEFQED PQRESDQSQK  180
KHKNDQSKET VNKESSQSEE APKENYIHMR ARRGQATNSH SLAERVRREK ISERMRLLQE  240
LVPGCNKITG KAVMLDEIIN YVQSLQQQVE FLSMKLATVN PEINIDIDRI LAKDLLQSRD  300
RNTPTLGLNP FTGFQGTIPN LSTTTNPHYN SLPQTTLESE LQNLYQMGFV SNPSTMSSFS  360
PNGTIPNLST TTNPHYNSLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g011610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221806	0.0	AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBank	BT012655	0.0	BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475871.1	0.0	PREDICTED: transcription factor bHLH74-like
Swissprot	Q6NKN9	0.0	BH074_ARATH; Transcription factor bHLH74
TrEMBL	R0I6X0	0.0	R0I6X0_9BRAS; Uncharacterized protein
STRING	XP_010475871.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]