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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa13g027510.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 292aa MW: 32351 Da PI: 6.3379 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa13g027510.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 23.6 | 1.3e-07 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++Cgk F+r nL+ H+r H
Csa13g027510.1 212 HYCQICGKGFKRDANLRMHMRAH 234
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MTNQDEHITN KGEGSMSSFS GTTTSSSKQI YLNPVTAAGT KSLEEDDVSL SLIYNLSTLQ 60
DKAHQIQSLV SFYMISINHI NQSSGSTSLA VANIGSLIQE IITAASSMLF ACQQLHIGSN 120
NDNDIHNDQT ADAMVLDFSR QETDPSRDFV QESTNLFGVQ ERGQISFPDQ NHNWYGTETI 180
NPKKEHHHSK PRPGNYEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT 240
REALISPTSQ DKKGDYSKDK LMSHVSLFLG HVPAHGSSQP PTITLRSFCI L*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB005243 | 0.0 | AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17. |
| GenBank | AK227740 | 0.0 | AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
