PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g077550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 237aa MW: 26150.8 Da PI: 9.6974 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.9 | 3.2e-33 | 62 | 140 | 3 | 82 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 +kk++++++h kv+gR+RRvRl+++caar+++L++eLG+++d++tieWLlqqa+p+i+ +tg++ ++ ++ ++s ++s+ Csa12g077550.1 62 KKKKPNKDRHLKVEGRGRRVRLPLLCAARIYQLTKELGLKSDGETIEWLLQQAEPSIISATGNGIKPIGAT-TDSVVVSQ 140 79*************************************************************66665333.33333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.794 | 67 | 121 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-26 | 67 | 134 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDPKKNPNFL NASPHHQNND KKRKQTVVKG FDIVVGDKEL KTKTKEKEEE ERNQLLIEQE 60 KKKKKPNKDR HLKVEGRGRR VRLPLLCAAR IYQLTKELGL KSDGETIEWL LQQAEPSIIS 120 ATGNGIKPIG ATTDSVVVSQ PRPLLTADLM VGHNTQGGAP TPRSQMAANG LLWWMNETGQ 180 NTTERVFDLN CGIEFGFKGV SEMGLGNNQR PGLELALSQD SGNVGALGVY QQMGQE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g077550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450576.1 | 1e-174 | PREDICTED: transcription factor TCP6-like | ||||
Swissprot | Q9FLM6 | 9e-82 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | D7MIZ9 | 1e-89 | D7MIZ9_ARALL; Uncharacterized protein | ||||
STRING | XP_010450576.1 | 1e-174 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 1e-80 | TCP family protein |
Publications ? help Back to Top | |||
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