PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g028200.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 339aa MW: 38719.1 Da PI: 8.977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g028200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	181	200	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Csa12g028200.1 181 FACSICSKTFNRYNNMQMHM 200 78*****************9 PP
2	zf-C2H2	10.9	0.0014	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ Csa12g028200.1 266 FSCGKCGKALAVKGDWRTHEKNC 288 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.89E-9	160	204	No hit	No description
PROSITE profile	PS50157	10.45	181	208	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	181	203	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	181	200	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	229	261	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.04E-5	251	286	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-4	252	286	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	190	266	286	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MNPYEKGLSF GSPSFIEWLK PPSSPSVLYC MKTRDAISRS NHHQSQMNML ERSLFLYQPQ 60 EPLNTSIQCL PLLNNLMENK SRQRQALDDI KEESKDDVVT LQIGFPNYHR GNSSAEDDSD 120 TTSDHQKKPI KRERIDNGVV LMKMRRKMKY DEKVIDSDME VCGKRFWIPS PAQIHVGPMQ 180 FACSICSKTF NRYNNMQMHM WGHGSEFRKG ADSLKGTTQP AAILRLPCYC CAEGCKNNIN 240 HPRSKPLKDF RTLQTHYKRK HGSKPFSCGK CGKALAVKGD WRTHEKNCGK LWYCTCGSDF 300 KHKRSLKDHI RSFGSGHAPH PSLSFDGFEE DTECVTTE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	KMRRKM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g028200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF254448	0.0	AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBank	AK118851	0.0	AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBank	AY090918	0.0	AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010448488.1	0.0	PREDICTED: zinc finger protein WIP3-like
Swissprot	Q9SGD1	0.0	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A178WMP3	0.0	A0A178WMP3_ARATH; WIP3
STRING	XP_010448488.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	0.0	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]