PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g014570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 307aa    MW: 34545.5 Da    PI: 7.395
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g014570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29172230158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dg++WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
  Csa12g014570.1 172 VKDGFQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 230
                     58***************************99**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28163231IPR003657WRKY domain
SuperFamilySSF1182908.63E-25168231IPR003657WRKY domain
SMARTSM007741.4E-33172232IPR003657WRKY domain
PfamPF031065.2E-24173230IPR003657WRKY domain
PROSITE profilePS5081125.499174233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDCSSFLDLN TNPFPEKLLP KEEVSVSVST QLKRKWLEQD ESASELREEL NRVNSENKLL  60
TEKLATVYQN YYALHHHLEK LQSRRSPEID QTEQPIKKRK QDPDELLGFP IGLSSGITEN  120
SSSNEDHHHH QQQHEQKNQL LSCKRPVTDS FNKAKVSTVY VPTDTSDTSL TVKDGFQWRK  180
YGQKVTRDNP SPRAYFRCSF APSCPVKKKV QRSAEDPSLL VATYEGTHNH LGPNASEGDV  240
TSQNGSNTVT LDLVHGNHRL GLEKNERNSM QEVLVQQMAS SLTKDSKFTA ALAAAISGRL  300
MEQSRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-201722331474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g014570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246980.0AF224698.1 Arabidopsis thaliana WRKY DNA-binding protein 18 (WRKY18) mRNA, complete cds.
GenBankAF4284210.0AF428421.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds.
GenBankAK2274010.0AK227401.1 Arabidopsis thaliana mRNA for WRKY like transcription factor, complete cds, clone: RAFL14-06-B12.
GenBankAY0880480.0AY088048.1 Arabidopsis thaliana clone 40692 mRNA, complete sequence.
GenBankAY1255570.0AY125557.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447543.10.0PREDICTED: WRKY transcription factor 18
SwissprotQ9C5T40.0WRK18_ARATH; WRKY transcription factor 18
TrEMBLR0H0X10.0R0H0X1_9BRAS; Uncharacterized protein
STRINGXP_010447543.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.10.0WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Keates SE,Kostman TA,Anderson JD,Bailey BA
    Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis.
    Plant Physiol., 2003. 132(3): p. 1610-22
    [PMID:12857840]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R
    AthaMap: from in silico data to real transcription factor binding sites.
    In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52
    [PMID:16922688]
  4. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  7. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  8. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  9. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  10. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]