PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g014570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 307aa MW: 34545.5 Da PI: 7.395 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 172 | 230 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dg++WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh Csa12g014570.1 172 VKDGFQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 230 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-28 | 163 | 231 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-25 | 168 | 231 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-33 | 172 | 232 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-24 | 173 | 230 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.499 | 174 | 233 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MDCSSFLDLN TNPFPEKLLP KEEVSVSVST QLKRKWLEQD ESASELREEL NRVNSENKLL 60 TEKLATVYQN YYALHHHLEK LQSRRSPEID QTEQPIKKRK QDPDELLGFP IGLSSGITEN 120 SSSNEDHHHH QQQHEQKNQL LSCKRPVTDS FNKAKVSTVY VPTDTSDTSL TVKDGFQWRK 180 YGQKVTRDNP SPRAYFRCSF APSCPVKKKV QRSAEDPSLL VATYEGTHNH LGPNASEGDV 240 TSQNGSNTVT LDLVHGNHRL GLEKNERNSM QEVLVQQMAS SLTKDSKFTA ALAAAISGRL 300 MEQSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-20 | 172 | 233 | 14 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g014570.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF224698 | 0.0 | AF224698.1 Arabidopsis thaliana WRKY DNA-binding protein 18 (WRKY18) mRNA, complete cds. | |||
GenBank | AF428421 | 0.0 | AF428421.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds. | |||
GenBank | AK227401 | 0.0 | AK227401.1 Arabidopsis thaliana mRNA for WRKY like transcription factor, complete cds, clone: RAFL14-06-B12. | |||
GenBank | AY088048 | 0.0 | AY088048.1 Arabidopsis thaliana clone 40692 mRNA, complete sequence. | |||
GenBank | AY125557 | 0.0 | AY125557.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447543.1 | 0.0 | PREDICTED: WRKY transcription factor 18 | ||||
Swissprot | Q9C5T4 | 0.0 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | R0H0X1 | 0.0 | R0H0X1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010447543.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 0.0 | WRKY DNA-binding protein 18 |