 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa11g102450.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
MYB |
| Protein Properties |
Length: 293aa MW: 33084.1 Da PI: 5.282 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g102450.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31
+g+W +eEd++l+++++++G +W++ ++
Csa11g102450.1 14 KGPWLPEEDDKLINYIHKHGHSSWSALPKLA 44
79***********************998865 PP
|
| 2 | Myb_DNA-binding | 35.6 | 2.2e-11 | 51 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W +eEd++l+++++++G +W++ ++ +++k++w+++l
Csa11g102450.1 51 KGPWLPEEDDKLINYIHKHGHSSWSALPKLAD-----NEIKNFWNTHL 93
79************************888887.....********996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MGRSPSSDET GLKKGPWLPE EDDKLINYIH KHGHSSWSAL PKLADETGLK KGPWLPEEDD 60
KLINYIHKHG HSSWSALPKL ADNEIKNFWN THLKKKLIQM GFDPMTHRPR TDDIFSSLSQ 120
LMSLSNLRGL VDLQQQVPIE EQALLNLQAE MARLQLFQYL LQPPPPMTSS SINPNDLNIL 180
NLLIKENSNT SNLDLGFLTS HLQDFNNNLP SLKNIDNNHF SQKSSPIWFH EPPSLNQTML 240
PSHDPCAQSV DGFGGNQASS SHDQEIAITD VVEWPDQHLF DDSMFPDIPY QS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB013395 | 0.0 | AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23. |
| GenBank | AF062889 | 0.0 | AF062889.1 Arabidopsis thaliana putative transcription factor (MYB53) mRNA, partial cds. |
| GenBank | AY519646 | 0.0 | AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
