PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 238aa MW: 26668.2 Da PI: 6.1432

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g098870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.3e-15	15	65	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lvd + +G+g +W+ +++ g++R++k+c++rw +yl Csa11g098870.1 15 KGPWTVEEDGKLVDFLRIHGSGggwCWRNVPKLAGLRRCGKSCRLRWTNYL 65 79***********************************************97 PP
2	Myb_DNA-binding	53.9	4.3e-17	71	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++ Csa11g098870.1 71 RGLFSEEEIQLVIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 115 7889****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-19	6	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.707	10	65	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-25	12	112	IPR009057	Homeodomain-like
SMART	SM00717	8.5E-10	14	67	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-14	15	65	IPR001005	SANT/Myb domain
CDD	cd00167	1.73E-7	17	65	No hit	No description
PROSITE profile	PS51294	25.744	66	120	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-25	68	121	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-16	70	118	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-15	71	115	IPR001005	SANT/Myb domain
CDD	cd00167	5.81E-12	74	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGGRKPCCDE VGLRKGPWTV EEDGKLVDFL RIHGSGGGWC WRNVPKLAGL RRCGKSCRLR 60 WTNYLRPDLK RGLFSEEEIQ LVIDLHARLG NRWSKIAVEL PGRTDNDIKN YWNTHIKRKL 120 IRMGIDPNTH RRFDQQKVNE EEKVLKVNSP KPPSEPEVVV PVVLQNDTSA GNLNELADVD 180 GDDQPWSFLM KNDGVGAGEL TMLLSGDIAS SCSSSSSLWL KYGDLGYDDL ELGCFDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-27	13	120	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g098870.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF199026	0.0	AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBank	AY519644	0.0	AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444041.1	1e-174	PREDICTED: protein ODORANT1-like
Swissprot	Q9C7U7	2e-67	MYB20_ARATH; Transcription factor MYB20
TrEMBL	R0F0I2	1e-141	R0F0I2_9BRAS; Uncharacterized protein
STRING	XP_010444041.1	1e-173	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62320.1	1e-126	myb domain protein 99

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]