PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 285aa MW: 33207 Da PI: 6.3998

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g078930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9.4e-19	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Csa11g078930.1 28 RGPWTVEEDLELINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP
2	Myb_DNA-binding	50.7	4e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Csa11g078930.1 81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.378	23	79	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-31	25	122	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-16	27	77	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-17	28	75	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-23	29	82	IPR009057	Homeodomain-like
CDD	cd00167	4.24E-11	30	75	No hit	No description
SMART	SM00717	2.9E-14	80	128	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.378	80	130	IPR017930	Myb domain
Pfam	PF00249	6.6E-15	81	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-22	83	129	IPR009057	Homeodomain-like
CDD	cd00167	2.39E-6	101	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDDKAKSLKI NKNMEDFANV EEEMDLKRGP WTVEEDLELI NYIANHGEGR WNSLARCAGL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN 120 YWRTRVQKHA KQLRWDVNSQ QFKDTMKYLW MPRLVERIQA TSTRSVSTSS CVTTSSDQFV 180 INNNTTNMEH LSLTSNPNGH IITSDHSNVA VSPSSDLTEC HPQTSSQNYL DNNNCLFGDF 240 TKVQDQSYLN GMIPNYWDST FWNIEYDEDL WLLQQQQQLD SGSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-26	25	122	24	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g078930.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519635	0.0	AY519635.1 Arabidopsis thaliana MYB transcription factor (At5g49620) mRNA, complete cds.
GenBank	BT026076	0.0	BT026076.1 Arabidopsis thaliana At5g49620 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442426.1	0.0	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	1e-146	MYB78_ARATH; Transcription factor MYB78
TrEMBL	D7MPC7	1e-152	D7MPC7_ARALL; AtMYB78
STRING	XP_010442426.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-132	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]