PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g070410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 376aa    MW: 41089.7 Da    PI: 8.4888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g070410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.9e-0899123426
                     ---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartG..tCkyGdrCkFaHg 26 
                     e C+ ++r G   C++Gd+C FaHg
  Csa11g070410.1  99 EVCPEYSRQGggDCSRGDQCGFAHG 123
                     78**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.003795124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.00199125IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-599123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.197100125IPR000571Zinc finger, CCCH-type
SMARTSM003562.5133156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDVGHINRPT VDIPPRKLLS SAKSPSSVSS PLRDYKDQRD YSYDSDSEDP YAGDHFRMYE  60
FKIRRCTRSR SHDWTDCPFS HPGEKARRRD PRRFHYIGEV CPEYSRQGGG DCSRGDQCGF  120
AHGVFECWLH PSRYRTEACK DGKHCKRKVC FFAHSPRQLR ILPPSSPENY ISGGCGGSAS  180
SSPASVLSNK NNRCCLFCSH SPTSTLLGLS RSPSSSPPLS PANKAAAFSR LSRRRTAVLN  240
ELISSLDSFS LTEALAASSS SPVTMPVSTT AMIASANLSN HHQHRVPPWL DVGERDLQLH  300
QGSPLQFALS PSSTPSYLHS QPSSSFFSDG LTPRGGRLSD FTAASAAAAE ARDKNSFEVG  360
SNGDLDLGWV NDLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g070410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441910.10.0PREDICTED: zinc finger CCCH domain-containing protein 61
SwissprotQ9FKW20.0C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLD7MMK20.0D7MMK2_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010441910.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-152C3H family protein