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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa11g068440.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | WRKY | ||||||||
| Protein Properties | Length: 1454aa MW: 163885 Da PI: 6.5525 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 44.4 | 3.3e-14 | 1334 | 1372 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
rsYY+C+s gC+++k+ver+++dp++++itY+ eHnh+
Csa11g068440.1 1334 RSYYKCSSLrGCSARKEVERCQTDPNMLVITYTFEHNHS 1372
9******998****************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00255 | 0.0038 | 35 | 166 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52200 | 2.88E-7 | 38 | 125 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52540 | 1.14E-38 | 157 | 399 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 3.4E-9 | 187 | 278 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 2.7E-8 | 193 | 284 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 1.2E-23 | 195 | 210 | No hit | No description |
| PRINTS | PR00364 | 1.2E-23 | 264 | 278 | No hit | No description |
| Pfam | PF00931 | 1.9E-8 | 298 | 408 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 1.2E-23 | 339 | 353 | No hit | No description |
| SuperFamily | SSF46785 | 2.01E-10 | 380 | 474 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| SuperFamily | SSF52058 | 6.38E-32 | 511 | 836 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.5E-25 | 517 | 826 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF07725 | 2.7E-7 | 580 | 599 | IPR011713 | Leucine-rich repeat 3 |
| PRINTS | PR00364 | 1.2E-23 | 754 | 770 | No hit | No description |
| Pfam | PF13966 | 2.1E-6 | 1191 | 1254 | IPR026960 | Reverse transcriptase zinc-binding domain |
| SMART | SM00774 | 2.1E-8 | 1330 | 1373 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 1.16E-11 | 1333 | 1374 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 2.8E-12 | 1333 | 1371 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 2.9E-15 | 1333 | 1374 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 17.58 | 1334 | 1374 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0007165 | Biological Process | signal transduction | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1454 aa Download sequence Send to blast |
MECSANTIVL KSLFSFRCDP DSLTSTISKI MAESEQIVYI SCVEEVRYSF VSHLSAALRR 60 KGIHDLFIDS DDLLSDESKS KIERAKVSVM ILPSNRTVCL DKFVKVLECR TNKDQAVVPV 120 LYGVRSIENL WVSALDSKGF SLVHQTRKEC SDSQLVKEIV RDVYEKLFSM ERIGIYPKLL 180 EIENMVSKQP FGIRCVGIWG MPGIGKTTLA KAVFDQMSGG FDASCFIQDY TKAIQEKGIY 240 RLLEEQFLKD KPGNIPKLSL LRDKLNNKRV LVVLDDVRNP LVVESFLRGC FAFVESIKCY 300 EVQGLNEKEA LQLFSLCASI DNQAEQKLHE VSMKVIKYAN GHPLALNIYG SELKGKKIPP 360 EMETASLELK ERPPTKFVDA IMSCYDTLND SQKNIFLDIA CFFQGENVDY VMQLLESCGF 420 FPHVGIDVLV EKCLVAISEN RVRMHNLIQN AGRKIITIET GQTKRRSRLW EPWCIKALLE 480 NNNERKENGE RETTSKHALG TEEIEGMFLD TSNLCFDIEP AAFDNMLNLR LLKIYSSNPE 540 VHHVISVLEG SLYSLPNELR LLHWENYPLQ FLPQKFDPIH LVEINMPYSE LKNLWGGTKN 600 LEMLRTIRLC HSQQLVDIDD ILKAQNLEVI DLQGCTRLQS FPAVGHLLHL RVVNLSGCTE 660 IKSFPEIPPN IETLNLQGTG IIELPLSIVK PNYRELLNLL AEIPGLSGVS NLEQSDLKPL 720 ASLMKMSTSN QNLCKLIFLE LKDCSRLRSL PNMDNLELLK VLDLSGCSDL ETIQGFPRNL 780 KELYLAGTAV RQVPQLPQSI EFFNAHGCVS LKSICLNFEK LPVHYLFSNC FDLSPQVVND 840 FLVKALANAE HIPREGQQEP NKALAFSFCA PSHANQNSKL DLQLGSSVMT RLNPSWRNTL 900 VGFAMLVEVA FSEVYCDPTG FGISYVCKWK NKQGQSHRIQ KNLHCWALGK TVPKVQKDHM 960 FVFCDVNMLP STDEENDPDI WADLVVFEFF PVNKQTKPLD VSFTVTRCGV RVITAASCNT 1020 SLENISPVLS LDAMEVSGNE GEEVSRVSYD GLQEIDKALF LAGQVSRVSY NGLQEIDKAL 1080 FLCIAGLFND EGVGLVAPLI DKIIDMDVSY GLKVLADRLM DVFGDRGVID LGISKQLSLA 1140 EVWVSRRHRR RHRGDQLNAV EQALGSRRDL RRESDDQVLW QGRNDVFKTT FSTKDTWNHI 1200 RTMANTVSWH KGVWFTHGTL KFSFCVWLAV QDRLPTGDRM VMWNGTAAGN CGLFKAHFST 1260 DWSAVMAHLS LSTLPRVEGF LLRYVFQMVV YTIWRERNGR RHGDLPHSAT YLVGWIDRQV 1320 RDQLLAIGRL GDRRSYYKCS SLRGCSARKE VERCQTDPNM LVITYTFEHN HSCPMNARLS 1380 AAPLVPLPPP NAQLCSSSSK CSVGTTSASS RVSRNEDEAN KYHFPSSPTP LNAAEGVKEE 1440 DAEEPFDNMD FAG* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4c6t_A | 4e-43 | 32 | 174 | 3 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
| 4c6t_C | 4e-43 | 32 | 174 | 3 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa11g068440.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019088163.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 16 | ||||
| Swissprot | Q9FL92 | 0.0 | RRS1B_ARATH; Disease resistance protein RRS1B | ||||
| TrEMBL | R0G8C3 | 0.0 | R0G8C3_9BRAS; Uncharacterized protein | ||||
| STRING | XP_010441797.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2506 | 8 | 14 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G45050.1 | 0.0 | Disease resistance protein (TIR-NBS-LRR class) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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