PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 212aa MW: 23932.7 Da PI: 6.9608

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g057510.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Csa11g057510.1 20 KGPWTMEEDLILINCIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 67 79********************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	73	116	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++ + +++ ++G++ W++Ia++++ gRt++++k++w++ Csa11g057510.1 73 RGNITAEEQLTIMELHSKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 116 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-22	15	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.205	15	67	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-30	17	114	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-13	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	20	67	IPR001005	SANT/Myb domain
CDD	cd00167	4.38E-10	22	67	No hit	No description
PROSITE profile	PS51294	23.344	68	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-23	71	121	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-14	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-15	73	116	IPR001005	SANT/Myb domain
CDD	cd00167	7.55E-11	77	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEKRVGGTGG SGSGDADVRK GPWTMEEDLI LINCIANHGE GVWNSLAKSA GLKRTGKSCR 60 LRWLNYLRPD VRRGNITAEE QLTIMELHSK WGNRWSKIAK HLPGRTDNEI KNFWRTKIQK 120 YIIKNGETTT AGSQSSEIIN HHATSTGQVL NDTQEPMDMY SQHANNIDHQ LSYNTYVPES 180 DSTMIPLSVD QSEQNYWSVD DLWPMHLYNG N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-26	14	122	1	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269\|PubMed:16805732, ECO:0000269\|PubMed:16972096, ECO:0000269\|PubMed:19091873, ECO:0000269\|PubMed:19325888, ECO:0000269\|PubMed:21447791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g057510.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by jasmonate. {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF175987	0.0	AF175987.1 Arabidopsis thaliana putative transcription factor (MYB24) mRNA, complete cds.
GenBank	AY519632	0.0	AY519632.1 Arabidopsis thaliana MYB transcription factor (At5g40350) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441167.1	1e-158	PREDICTED: transcription factor MYB24-like
Swissprot	Q9SPG9	1e-126	MYB24_ARATH; Transcription factor MYB24
TrEMBL	R0H558	1e-125	R0H558_9BRAS; Uncharacterized protein
STRING	XP_010441167.1	1e-157	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-128	myb domain protein 24

Publications ? help Back to Top
Liu Z, et al. A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation. Mol Plant, 2015. 8(12): p. 1751-65 [PMID:26388305] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Huang H, et al. Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development. Front Plant Sci, 2017. 8: p. 1525 [PMID:28928760]