PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 266aa MW: 30531.8 Da PI: 8.8912

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g018960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.7e-14	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ +G +W+t++ + g+ R +k+c++rw +yl Csa11g018960.1 12 KGLWSPEEDEKLRSCILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 59 678*******************************************97 PP
2	Myb_DNA-binding	43.8	5.8e-14	69	110	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++eE+e ++ + lG++ W+ Ia+ ++ gRt++++k++w+++l Csa11g018960.1 69 SAEEEETILTFHSSLGNK-WSQIAKFLP-GRTDNEIKNYWHSHL 110 89**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.769	7	59	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-27	11	106	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-10	11	61	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-12	12	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-20	13	66	IPR009057	Homeodomain-like
CDD	cd00167	2.68E-7	15	59	No hit	No description
PROSITE profile	PS51294	21.158	60	114	IPR017930	Myb domain
SMART	SM00717	2.2E-12	64	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-23	67	113	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-12	69	110	IPR001005	SANT/Myb domain
CDD	cd00167	4.49E-9	69	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0010018	Biological Process	far-red light signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MAKTKSGEKQ RKGLWSPEED EKLRSCILSH GHSCWTTVPI KAGLQRNGKS CRLRWINYLR 60 PGLKREMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN EIKNYWHSHL KKRWLKSRNL 120 QHPKFISSSS SPSSSLVSCG KRNPETLISN HVISFQRLLE NKSSSPSQES NGNNNYQSSS 180 APELPRLFFN EWLSSSDPHT DDSSVFTDSK HNQAPNVENN VSDYEETSDV DRFHYNEMMI 240 NNNNWTLNDV VFGSKFQKHE SQRES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-22	12	113	7	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g018960.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519609	0.0	AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438863.1	0.0	PREDICTED: transcription factor LAF1-like
Swissprot	Q9M0K4	1e-159	LAF1_ARATH; Transcription factor LAF1
TrEMBL	R0FAN0	1e-166	R0FAN0_9BRAS; Uncharacterized protein
STRING	XP_010438863.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	1e-158	myb domain protein 18

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]