PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g051430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 254aa    MW: 28712 Da    PI: 10.3017
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g051430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.91.3e-1354139391
          DUF573   3 fqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                     +qrl + ee ei++LqG++d+ a tgk+p+ ++++ +ef+k+  +++ s +++veK+ +LKk   +++++    keps s   +qk+ +l
  Csa10g051430.1  54 SQRLeYEEEEEISVLQGILDCYALTGKNPFVNMKETFEFMKEYTNLE-SFDEFVEKMNSLKKVLMDQRRN---AKEPSTSGCYYQKVSKL 139
                     689989************************************99998.5678**********99999888...77777777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.0E-759129IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGKVNSNRSE KKEVCGGSGA AQLTGKKRKN EGTLLANKDV NAKRSKKVAK NVCSQRLEYE  60
EEEEISVLQG ILDCYALTGK NPFVNMKETF EFMKEYTNLE SFDEFVEKMN SLKKVLMDQR  120
RNAKEPSTSG CYYQKVSKLL TLSSGDNVGS AVEKPKRSKR VVKPKEEKQT AMSREGEKWF  180
ENASLVRQVV SRGVDEDSLK SKWDGVPTVK KNKMDQKWRV LRAKERESMP QKSKFFKDLV  240
SVIVGASLSS RLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g051430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086367.10.0PREDICTED: probable transcription factor At4g00232
TrEMBLR0I4G64e-82R0I4G6_9BRAS; Uncharacterized protein
STRINGXP_010490439.11e-124(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16691712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00232.14e-24DNA-binding storekeeper protein-related transcriptional regulator