PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g025370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 392aa    MW: 44865 Da    PI: 5.1421
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g025370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34161072102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++ ++++sws++++sf+v+++ +f++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++
  Csa10g025370.1  16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPDFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQSHLMKN 101
                     9**************************************************************99988.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Csa10g025370.1 102 IHRRKP 107
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.03E-3411105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3613105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPDF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQSHLMK NIHRRKPVHS HSLPNLQAQQ  120
NLLTDSERVR MKNQIERLTK EKEGLLEELQ KQDEEREGFE MQVKELKERL QRMEKRQKTM  180
VSFVSQVLEK PGLALNLSPC VPEPNERKRR FPRIGFLPDE PMMEENQTCV VVREEGSTSP  240
SSHTTEHQVE QLGSSIAIWE NLVSDSCESM LQTRSMMTLD VDDSSTCPES PPLSCIQLSI  300
DKRPKSPSSP RIIDMNSEPD VTKEQNNTVA APPPSVAGAN DVFWQQFFSE NPGSTEQRDK  360
AEDRSEKLWW SSRNVNTITE QLGHLTSSER S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-231110524129Heat shock factor protein 1
5d5v_B8e-231110524129Heat shock factor protein 1
5d5v_D8e-231110524129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g025370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1255120.0AY125512.1 Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds.
GenBankBT0010490.0BT001049.1 Arabidopsis thaliana At4g18880/F13C5_50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434484.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010434485.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010434486.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010434487.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010434488.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019086845.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLR0GWP50.0R0GWP5_9BRAS; Uncharacterized protein
STRINGXP_010434484.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]