PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g010570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARR-B | ||||||||
Protein Properties | Length: 527aa MW: 59201.7 Da PI: 6.6189 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.7 | 2e-26 | 187 | 240 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ Wt+eLH++F+ av++L G ekA+Pk+il+lm+v+ Lt+e+v+SHLQk+R+ Csa10g010570.1 187 KPRVLWTHELHNKFLAAVDHL-GVEKAVPKKILDLMNVDKLTRENVASHLQKFRV 240 79*******************.********************************7 PP | |||||||
2 | Response_reg | 86.6 | 7.1e-29 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+++ +++l+++l + +y +v+++ +++ ale+l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + +k G Csa10g010570.1 21 VLAVDDDQTCLRILQTLLHRCQY-HVTTTNQAQTALEMLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHG 113 799********************.***************888888*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + Csa10g010570.1 114 ACDYLLKPVRIEELKN 129 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.34E-36 | 18 | 143 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.7E-44 | 18 | 172 | No hit | No description |
SMART | SM00448 | 6.4E-34 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.595 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.3E-26 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.11E-29 | 22 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 184 | 244 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.71 | 184 | 243 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-19 | 185 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-25 | 187 | 240 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 191 | 238 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MTMTIEQEIE VLDQFPIGMR VLAVDDDQTC LRILQTLLHR CQYHVTTTNQ AQTALEMLRE 60 NKNKFDLVIS DVDMPDMDGF KLLELVGLEM DLPVIMLSAH SDPKYVMKGV KHGACDYLLK 120 PVRIEELKNI WQHVVRKSKL KKNKSSVSNG TGNSDKANNN RKRKEQYEEE EEEERGNEND 180 DPTAQKKPRV LWTHELHNKF LAAVDHLGVE KAVPKKILDL MNVDKLTREN VASHLQKFRV 240 ALKKVSDEAN QQANRVAIDS HLMQMTSHKG VGGFYHHRAI PVGSGQFHGG ATMMRHYPSN 300 RNLGRVNSLA GGMFQPVSSS FPRNHNDGGN ILQGLPLPPL EELQINKAYQ SFNSQQNSLM 360 VAPNNLLLLE GHPQSSSPSL NQGFSPHFEI NNNKRLEHWS NTVLSTNMPQ RNVHSKPDTL 420 EWTTFCDSAS PLVNPNLDTS STSFCRNTDF GSSNAAQTDF FHPLQMNQQH ASNWGPMTEA 480 QLFRNCDSKE GLHMASDAGS LDDIVNSLMT QEQSPTDFSE GGWVMV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-35 | 183 | 246 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00072 | SELEX | Transfer from AT4G31920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g010570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ005195 | 0.0 | AJ005195.1 Arabidopsis thaliana mRNA for receiver-like protein 4. | |||
GenBank | AK228149 | 0.0 | AK228149.1 Arabidopsis thaliana mRNA for predicted protein, complete cds, clone: RAFL14-61-J20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432800.2 | 0.0 | PREDICTED: two-component response regulator ARR10-like | ||||
Swissprot | O49397 | 0.0 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
TrEMBL | D7MAT8 | 0.0 | D7MAT8_ARALL; Two-component response regulator | ||||
STRING | XP_010432800.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 0.0 | response regulator 10 |