PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 366aa    MW: 39490.2 Da    PI: 8.937
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822219.95.5e-68582011145
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 
                     g+sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+  ++++ g+ ++ s++ss+
  Csa10g004450.1  58 GSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPPaAASDMSGTPTNLSTNSSI 152
                     689*************************************************************************99999************** PP

          DUF822  95 qsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                     q s++ssa++sp++sy+ sp sssfpsps++d ++++    llp+l++ ++
  Csa10g004450.1 153 QPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNHSS--YLLLPFLHNIAS 201
                     **********************************887..899999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.0E-6359185IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
QRKSFLLLHL CISLTLSLSL VRYSDKDFRE RFSDNFLFSM AAGGIGGVDG GGGGGGGGSS  60
GRTPTWKERE NNKKRERRRR AITAKIYSGL RAQGNYKLPK HCDNNEVLKA LCLEAGWIVE  120
DDGTTYRKGF KPPAAASDMS GTPTNLSTNS SIQPSPQSSA FPSPAPSYHG SPVSSSFPSP  180
SRYDGNHSSY LLLPFLHNIA SSIPANLPPL RISNSAPVTP PLSSPTSRGS KRKLTSEQLL  240
PNGGGSLHAL RHPLFAISAP SSPTRRAGHQ TPPTIPECDE SEEDSIEDSG RWINFQSTAP  300
TSPTFNLVKQ TSMVIDMKRS DWGMNGRGAE FEFENGTVKP WEGEMIHEVG VEDLELTLGG  360
TKTRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-2462132372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-2462132372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-2462132372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-2462132372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284125.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-180BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLR0H0R80.0R0H0R8_9BRAS; Uncharacterized protein
STRINGXP_010432137.10.0(Camelina sativa)
STRINGXP_010497285.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.12e-89BES1/BZR1 homolog 2