PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g087060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 325aa    MW: 36279 Da    PI: 6.6858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g087060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12136182455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  Csa09g087060.1 136 EHVLAERKRRQKLNERLIALSALLPGL-----KKTDKATVLEDAIKHLKQLQ 182
                     5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.745132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-16133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15136195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-12137186No hitNo description
SMARTSM003532.8E-14138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDSSFMDLM IDTDEYLIDD WESDFPIWGE TNTKHVSESG SGTETGFELL PERPAKQMKT  60
TNNNINTISS SPSSSSSSSG SRTSQVISFG SPDTKTNPVE TSLNFSNQVS TDQRTRSERR  120
DCVNNGGRRE PHLLKEHVLA ERKRRQKLNE RLIALSALLP GLKKTDKATV LEDAIKHLKQ  180
LQERVKKLEE ERVGTKKMDQ SVILVKRSQV YLDDDSSSYS STCSAASPLS SSSEEVSILK  240
QTMPMIEARV SDRDLLIRVH CDNSKGCLIK IVSSLEKFRL DVVNTFTLPF GQSTLVITIL  300
TKMDSKFSRP VEEVVKNIRL ALAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g087060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885640.0AF488564.1 Arabidopsis thaliana clone bHLH020 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429210.10.0PREDICTED: transcription factor NAI1-like
SwissprotQ8S3F11e-175BH020_ARATH; Transcription factor NAI1
TrEMBLR0FWX61e-180R0FWX6_9BRAS; Uncharacterized protein
STRINGXP_010429210.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-163bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]