PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g070530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 649aa    MW: 72162.5 Da    PI: 9.1348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g070530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.4e-141366148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++ W+t E++ll++av+++G+++W+++a++++       ++t+ +c++++ +++
   Csa09g070530.1 13 KQTWSTMEELLLACAVHRHGTDSWDSVAAEIQkqnstvRTLTAFDCRHKYCDLK 66
                     789***********************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-6766IPR009057Homeodomain-like
PROSITE profilePS500906.551866IPR017877Myb-like domain
SMARTSM007178.9E-91268IPR001005SANT/Myb domain
PfamPF002495.1E-141366IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-61368IPR009057Homeodomain-like
CDDcd001674.98E-61566No hitNo description
SMARTSM002972.1E-17131392IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.1E-15280410IPR001487Bromodomain
SuperFamilySSF473702.09E-19287404IPR001487Bromodomain
CDDcd043692.71E-18294387No hitNo description
PfamPF004393.5E-12299377IPR001487Bromodomain
PROSITE profilePS5001413.837302373IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAKPENDKKS PEKQTWSTME ELLLACAVHR HGTDSWDSVA AEIQKQNSTV RTLTAFDCRH  60
KYCDLKRRFS RELVSPGSTE GEQTVAAEIS SVPWLEELRK LRVDELRREV ERYDLSISSL  120
QLKVKRLEDE REESLKIEDS DLDKIAETKE NHRDSGNTSG AVPVDEPVNS PDPKDNNTGT  180
GSDNTNRDVK IAEPVDEEPN RIENDEKPVR EDSGRGSCES AGNSGREDTV REGNNSPEFV  240
ESMDESKGEE ETKETSDVQS SASLPRKETV EQDQPDNEDQ SLTVNMNPVE SQPLIDFIEI  300
LKSHPIGSHF SRRLESQETP EYDRIIRQHI DFEMIRSRVE EGYYKNSRSK FFRDLLLLIN  360
NGRVFYGESS SEFNAAKQLY QLIKKQMTLK IPKQTLPPPK EESLVTSKEE VTVPSLKPTT  420
LSVPMIACRK RSSLAVRTSA SVTEPSKKKT KVVSTVDEKP VSEEEKDETS DKDEEPIVSK  480
KMTRARAPST AKKVGSRNVK TSLNAGLPSK GRSSNDSSEP KKIVQDKKGK HTSGGSKKQS  540
AASFLKRMKG VSSSETVAET VKADSANGKR GAEQRKTIIK NEKVGAAKLS AGQKRSTGKK  600
PTIEKGSPAK KTTGVASKRS SPLIAKRDSE TIEKEAGSST RPKKRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g070530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427694.10.0PREDICTED: uncharacterized protein LOC104712482 isoform X2
TrEMBLD7LVY60.0D7LVY6_ARALL; Predicted protein
STRINGXP_010427692.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein