PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g064380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 406aa MW: 44394.8 Da PI: 6.6369

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g064380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.2e-14	230	284	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr+rr+ +NRe+ArrsR+RK++++ e + v +L ae ++L +l+ ++ +++ Csa09g064380.1 230 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLLTRLSDMNHKYD 284 68******************************************88888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	228	292	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-10	229	282	No hit	No description
PROSITE profile	PS50217	10.668	230	284	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.3E-12	231	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.3E-10	232	282	No hit	No description
PROSITE pattern	PS00036	0	235	250	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	7.3E-13	299	381	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MHIVFSVDDL TESFWPVPPP APSPGSTPAP TPSHNMADGM TRSQSEWAFH RLLNELSGSD 60 SSATTNATER SPPPVQSLSR VEETVDETED VVEIQKPQSH HHRLPSDDQG NRNRAPSSDP 120 LDSSAGGGVD PNQYHAILKS KLELACAAVA RRVGTVKPED SSASASNQKQ AQGSTVAQTS 180 PGASSVKFSS STSTQKKPDV PARQTTSISS RDDSDDDDLD GDADNGDPTD VKRARRMLSN 240 RESARRSRRR KQEQMNEFDT QVGQLRAEHS TLLTRLSDMN HKYDAAAVDN RILRADIETL 300 RTKVKMAEET VKRVTGVNPL HWARPNMGIP FNNTPSAPTR IPPNSNHILK PAVRSTTTSA 360 GLAPNQRVET ANFMPEQVDR EGMQNPFAPD SSNLYETLPH WNHKH*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MHIVFSVDDL TESFWPVPPP APSPGSTPAP TPSHNMADGM TRSQSEWAFH RLLNELSGSD  60
SSATTNATER SPPPVQSLSR VEETVDETED VVEIQKPQSH HHRLPSDDQG NRNRAPSSDP  120
LDSSAGGGVD PNQYHAILKS KLELACAAVA RRVGTVKPED SSASASNQKQ AQGSTVAQTS  180
PGASSVKFSS STSTQKKPDV PARQTTSISS RDDSDDDDLD GDADNGDPTD VKRARRMLSN  240
RESARRSRRR KQEQMNEFDT QVGQLRAEHS TLLTRLSDMN HKYDAAAVDN RILRADIETL  300
RTKVKMAEET VKRVTGVNPL HWARPNMGIP FNNTPSAPTR IPPNSNHILK PAVRSTTTSA  360
GLAPNQRVET ANFMPEQVDR EGMQNPFAPD SSNLYETLPH WNHKH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	251	RRSRRRKQ
2	246	251	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:19261733, ECO:0000269\|PubMed:19531597}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g064380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY057509	0.0	AY057509.1 Arabidopsis thaliana bZIP transcription factor-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010427169.1	0.0	PREDICTED: basic leucine zipper 25
Swissprot	Q9M1G6	0.0	BZP25_ARATH; Basic leucine zipper 25
TrEMBL	D7LUW0	0.0	D7LUW0_ARALL; Uncharacterized protein
STRING	XP_010427169.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5848	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54620.1	0.0	basic leucine zipper 25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Jain P, et al. A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation. Sci Rep, 2017. 7(1): p. 14343 [PMID:29084982] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]