PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g052850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 43484.7 Da PI: 6.4493 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.7e-10 | 120 | 166 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK +K+++L A+ +k+Lq Csa07g052850.1 120 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKVTVLDDAISRMKQLQ 166 5899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 120 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 120 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-15 | 120 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.59E-10 | 121 | 170 | No hit | No description |
SMART | SM00353 | 2.7E-13 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEEDFRLADF SLENIDFDFN IYEENINLSA NEADMDSRQA HRSSHFDHQM HLEFLGQKPK 60 SAVKPMMKIN NKPRVISFDF SSNVSSSPAV EEIIMDQLVG RGTKRKTCSH GTRSPVLAKE 120 HVLAERKRRE KLSEKFIALS ALLPGLKKAD KVTVLDDAIS RMKQLQEQLR KLKEEKEATR 180 EMESIILVKK SKVLYDDEPN LSSSPSYHNQ FDQALPEIEA KVSQNDVLIR IHCEKSKGRM 240 INILNTIENL QLRIENSIVL PFGDSTLDIT VLAQKSKVLY DDEPNLSSSP SYHNQFDQAL 300 PEIEAKVSQN DVLIRIHCEK SKGRMINILN TIENFQLRIE NSIVLPFGDS TLDITVLAQM 360 DKDFSVSVLK DLVRNHRLAL V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 129 | ERKRRE |
2 | 125 | 130 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g052850.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417033.1 | 0.0 | PREDICTED: transcription factor bHLH19-like | ||||
Swissprot | Q1PF16 | 1e-163 | BH019_ARATH; Transcription factor bHLH19 | ||||
TrEMBL | C0SV56 | 1e-161 | C0SV56_ARATH; Uncharacterized protein At2g22760 (Fragment) | ||||
STRING | XP_010417033.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-144 | bHLH family protein |
Publications ? help Back to Top | |||
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