PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g034330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 459aa MW: 51361.6 Da PI: 6.5108 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.6e-10 | 172 | 214 | 5 | 44 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 + rr+++NReAAr+sR+RKka++++Le+ + ++Le+e k+ Csa07g034330.1 172 RTLRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEEELKR 214 5679************************843355666665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-6 | 168 | 231 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.358 | 170 | 214 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-7 | 171 | 213 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.82E-7 | 172 | 214 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.7E-8 | 174 | 215 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 175 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-27 | 257 | 330 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQSVNGFHH DLSPIWLFHF SFADVTIASS 60 ANLHYTTFDT GMDCGGLRER LEVEDECLDT GQLVYQKGTR LVGGGGGGGG EVNGSLENWC 120 DSVSAMADNS QHTDTSTDID TDDKTQLNGV HQGVVLATNC SDQSKVKSSE QRTLRRLAQN 180 REAARKSRLR KKAYVQQLEN SRVRLAQLEE ELKRVRQQGS VVESGVTANH THLPAGNGAF 240 SFELEYTRWK EEHQRLINDL RSGVNSQLGD NELRMLVDAV MSHYNEIFRL KGIGTKVDVF 300 HMLSGMWKTP AERFFMWLGG FRSSELLKIL GNHVDPLTDQ QLIGICNLQQ SSQQAEDALS 360 QGMEALQQSL LETLSSASMG PNSSANVADY MGHMAMAMGK LGTLENFLRQ ADLLRQQTLQ 420 QLHRILTTRQ AARAFLVIHD YISRLRALSS LWLARPRD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g034330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118286 | 0.0 | AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21. | |||
GenBank | BT008586 | 0.0 | BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415491.1 | 0.0 | PREDICTED: transcription factor PERIANTHIA-like isoform X1 | ||||
Swissprot | Q9SX27 | 0.0 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | R0I710 | 0.0 | R0I710_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415491.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 0.0 | bZIP family protein |