PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 743aa    MW: 84482.7 Da    PI: 6.5846
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.52.3e-16229278555
         G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      Wt+e H +F+ a++ L G+++  Pk+il++m+ + Lt  +v+SHLQkY++
  Csa07g033820.1 229 LWTNERHMKFLAAISIL-GEKEFRPKSILKIMNDPNLTHRQVASHLQKYKT 278
                     6****************.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-812134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.7E-1113134No hitNo description
PROSITE profilePS5011017.81214128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-515123IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466894.57E-14225282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-17227282IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-15228278IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MVGSVTPQNV DDIFVLLIEH DAASVASLTS MLEPFSKKVI SMDAVSKALS IIEKQKKDIG  60
LVLANIEMPQ LDSHSFLTAL LQKNIPLTLI NPEKKTKKPS DLLTNRASFT LNKPISEIDI  120
KNMWQYVLHK KSQELMKINM TEDQENVIDK DIDQIEAFRA SLKRQRTSQA SLLGRQHFIS  180
KFTTYEAYHK RKIITNVERE SKPGCPIEVE NKRKEWMKVD NSVGRRQSLW TNERHMKFLA  240
AISILGEKEF RPKSILKIMN DPNLTHRQVA SHLQKYKTQI ERIRNILSIN EWKPTKKTVE  300
YPSDYEYPFK TSNLIKNLIA SNSLWNSLRK KNSSSSSSPI NPLLFKNPTV ERKKNMSKFH  360
RSKKLDLSNH SRLGNVFNKS SMNVASIPST ISSNPTLSIG NANHTSLVPT GLGSEIFHNL  420
SDLPSNTCVY QTESARISIP HYDPNPLHPP KIVHEVDINH INLDFPSVPA SFVPLEDLCN  480
LDENYNLLPN STMNSFETNI DQMSSNPFIE NHSHHRINMN HIDWNPSTDN YVFPQTDMNI  540
TFPRNNTNQK ESVSSKYGYV PPKIMIPSEV DINLMGIGYF GGNVLPQKEV GMNDVGLVYG  600
EMPYEFPMKT NMTTLETNTN EGLDVSIENL ISFDIGVEKN MAYWLEETSF SEGNNLLPSS  660
YLTDNVAFRK PIDSTPNTSM ENHDNFVAIN IGSTSQQHNT MESCEYHNVE AVNQKDDIGG  720
EDHLEDYRDC IDWIDQVMNK DV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415439.10.0PREDICTED: putative two-component response regulator-like APRR6
SwissprotQ9C9F60.0APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLR0I9140.0R0I914_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010415439.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.10.0pseudo-response regulator 6