PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g030810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 202aa MW: 22754.5 Da PI: 4.8272 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.7 | 2.7e-09 | 80 | 122 | 20 | 59 |
S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +sYYrC++a +C+++k+v+ ++ p v +tY g+H ++ Csa07g030810.1 80 SKKSYYRCAYAkehNCNATKRVQMIQDCPPVYRTTYMGQHICK 122 679******998999*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 3.2E-7 | 76 | 123 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-10 | 78 | 122 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.6E-10 | 78 | 123 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-10 | 79 | 122 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MFSNIDHKAL ASLLHGQGCA NSLKTLLDNR EISSVLIEPL VNTILDSFSL ALSFVDSPSP 60 PLHHESSSQN MAALVPQRSS KKSYYRCAYA KEHNCNATKR VQMIQDCPPV YRTTYMGQHI 120 CKSIPVYDDT YGSEMIQFDQ VVSESVMPLF TSTDHEAITI QDKATDHTMN QECDINDFLV 180 DYDQFWRNEF PSFSYGDSVF S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g030810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470533.1 | 1e-134 | PREDICTED: probable WRKY transcription factor 63 | ||||
Swissprot | Q9C6H5 | 9e-90 | WRK63_ARATH; Probable WRKY transcription factor 63 | ||||
TrEMBL | R0GDS1 | 1e-115 | R0GDS1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415204.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66560.1 | 8e-87 | WRKY DNA-binding protein 64 |
Publications ? help Back to Top | |||
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