PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g033960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 36806.1 Da PI: 6.7268 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1e-10 | 204 | 247 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + Csa06g033960.1 204 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 247 899********************************998777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-13 | 200 | 264 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.588 | 202 | 254 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.49E-11 | 204 | 258 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-13 | 204 | 255 | No hit | No description |
Pfam | PF00170 | 3.0E-9 | 204 | 248 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 5.65E-24 | 205 | 255 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 207 | 222 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT 60 HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDA HNNHNHHHHN NNNLNGNVGA 120 TRSSSNTSTP SDHNSLSDDD NKEAPPSDHD HNMDNNITNQ NNTAGNNYNE SDEVQSQCKT 180 EPQDGPSANQ NSGGSSGNRI HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE 240 VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ 300 SIKKMENNVS DQSPADIKPS VEKEQLLNV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator. {ECO:0000269|PubMed:17719007}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g033960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF401300 | 0.0 | AF401300.1 Arabidopsis thaliana transcription factor bZIP61 (BZIP61) mRNA, complete cds. | |||
GenBank | AY087356 | 0.0 | AY087356.1 Arabidopsis thaliana clone 34553 mRNA, complete sequence. | |||
GenBank | AY093053 | 0.0 | AY093053.1 Arabidopsis thaliana pelota-like protein (At3g58120) mRNA, complete cds. | |||
GenBank | BT008728 | 0.0 | BT008728.1 Arabidopsis thaliana At3g58120 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516459.1 | 0.0 | PREDICTED: basic leucine zipper 61-like | ||||
Swissprot | Q9M2K4 | 0.0 | BZP61_ARATH; Basic leucine zipper 61 | ||||
TrEMBL | R0HGS4 | 0.0 | R0HGS4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010516459.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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