PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g033790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 631aa    MW: 70227.3 Da    PI: 8.6303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g033790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10248848
                     HHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     E++ll++av+++G+++W+++a++++       ++t+ +c++++ +++
   Csa06g033790.1  2 EELLLACAVHRHGTDSWDSVAAEIQkqnsifRTLTAFDCRHKYCDLK 48
                     9******************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.516152IPR017930Myb domain
CDDcd001673.17E-4248No hitNo description
PfamPF002491.1E-10248IPR001005SANT/Myb domain
SMARTSM002971.7E-17113374IPR001487Bromodomain
SuperFamilySSF473707.06E-20269385IPR001487Bromodomain
Gene3DG3DSA:1.20.920.109.2E-16272370IPR001487Bromodomain
CDDcd043691.82E-19276369No hitNo description
PfamPF004392.1E-13281359IPR001487Bromodomain
PROSITE profilePS5001414.1284355IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MEELLLACAV HRHGTDSWDS VAAEIQKQNS IFRTLTAFDC RHKYCDLKRR FSRELVSPGS  60
TEGEETVAAE ISSVPWLEEL RKLRVDELRR EVERYDLSIS SLQLKVKRLE DEREESLKIE  120
DSDLDKIAET KENHRDSGNT SGAVPVDEPV NSPDPKDNNT GTGSDNTFKD VKITEPVDEE  180
PNRIDNDEKP VREDSGRGSC ESAANSDRED TVRKGNDSPE FVESMDESKG EEEAKETSDV  240
QSSASLPRKE TVEQNQPDNE DQSLTVNMNP VESQPLIDFI EILKSHPIGS HFSRRLESQE  300
TPEYDRIIRQ HIDFEMIRSR VEEGYYKNSR SKFFRDLLLL INNARVFYGE PSSEFNAAKQ  360
LYQLIKKQMT LKIHKQTLPP PKEESLVTSK EEVTVPSLKP TALSVPMIAC RKRSSLAVRT  420
SASVTEPSKK KTKVASTVDE KPVSEEEEDE TSDKDVEPIV SKKMTRARAP STAKKVGSRN  480
VKTSLNAGLP SKGRSSNDSS EPKKIVQDKK GKHTSGGSKK QSAASFLKRM KGVSSSETFV  540
ETVKADSANG KRGAEQRKSI SKNEKVDAAK LSAGQKRLTG KKPTIGKGSP AQKTTGVASK  600
RSSPLIAKRD SETSEKETGS STRPKKRSRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g033790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516436.10.0PREDICTED: uncharacterized protein LOC104792091 isoform X2
TrEMBLD7LVY60.0D7LVY6_ARALL; Predicted protein
STRINGXP_010516435.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein