PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g085100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 449aa MW: 49944.1 Da PI: 6.5654

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g085100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	160	202	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++k rr+++NReAAr+sR+RKka++++Le+ L + ++L Csa05g085100.1 160 QSKTLRRLAQNREAARKSRLRKKAYVQQLENSRVRLAQLEEEL 202 57899*************************8544444444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-5	158	221	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-7	159	206	No hit	No description
PROSITE profile	PS50217	9.197	160	204	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	161	202	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.05E-21	162	210	No hit	No description
SuperFamily	SSF57959	2.56E-7	162	205	No hit	No description
PROSITE pattern	PS00036	0	165	180	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.9E-28	247	320	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEPLDLSPNV TIASSANLHY 60 TTFDTGMDCG GLRKRLEVEG ECLDTGQLVY QKGTRLVAGG VGGGGGGEVN GSLENWCDSV 120 SAMADNSQHT DTSTDIDTDD KTQLNGVHQG VVLATNCSDQ SKTLRRLAQN REAARKSRLR 180 KKAYVQQLEN SRVRLAQLEE ELKRARQQGS VVESGVTANH THLPAGNGAF SFELEYTRWK 240 EEHQRLINDL RSGVNSQLGD NELRMLVDAV MSHYNEIFRL KGIGTKVDVF HMLSGMWKTP 300 AERFFMWLGG FRSSELLKIL GNHVDPLTDQ QLIGICNLQQ SSQQAEDALS QGMEALQQSL 360 LETLSSASMG PNSSANVADY MGHMAMAMGK LGTLENFLRQ ADLLRQQTLQ QLHRILTTRQ 420 AARAFLVIHD YISRLRALSS LWLARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEPLDLSPNV TIASSANLHY  60
TTFDTGMDCG GLRKRLEVEG ECLDTGQLVY QKGTRLVAGG VGGGGGGEVN GSLENWCDSV  120
SAMADNSQHT DTSTDIDTDD KTQLNGVHQG VVLATNCSDQ SKTLRRLAQN REAARKSRLR  180
KKAYVQQLEN SRVRLAQLEE ELKRARQQGS VVESGVTANH THLPAGNGAF SFELEYTRWK  240
EEHQRLINDL RSGVNSQLGD NELRMLVDAV MSHYNEIFRL KGIGTKVDVF HMLSGMWKTP  300
AERFFMWLGG FRSSELLKIL GNHVDPLTDQ QLIGICNLQQ SSQQAEDALS QGMEALQQSL  360
LETLSSASMG PNSSANVADY MGHMAMAMGK LGTLENFLRQ ADLLRQQTLQ QLHRILTTRQ  420
AARAFLVIHD YISRLRALSS LWLARPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g085100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	0.0	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	0.0	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511874.1	0.0	PREDICTED: transcription factor PERIANTHIA-like isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	R0I710	0.0	R0I710_9BRAS; Uncharacterized protein
STRING	XP_010511873.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]