PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g053760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 818aa    MW: 86271.6 Da    PI: 10.1732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g053760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.8e-12251295144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEde l+ avk++G g+W++Ia++     Rt+ q+  rw
   Csa05g053760.1 251 RKKWSAEEDEELIAAVKRHGEGSWALIAKEEFeGERTPSQLSQRW 295
                      789*************************99777789999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-15245299IPR009057Homeodomain-like
PROSITE profilePS5129417.387246303IPR017930Myb domain
SuperFamilySSF466892.08E-12247301IPR009057Homeodomain-like
SMARTSM007174.2E-11250301IPR001005SANT/Myb domain
PfamPF002491.1E-9251295IPR001005SANT/Myb domain
CDDcd116601.89E-13252295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MVDKSTNNKK RKEFISEEDI ATLLQRYDTA TILKLLQEMA YYADTKMDWN ELVKKTSTGI  60
TNAREYQLLW RHLAYRDSLL PVEDNAQLLL LQEMAYYADT KMDWNELVKK TSTGITNARE  120
YQLLWRHLAY RDSLLPVEDN AQLLNDDSDM ECELEASPAV SVDVVTEAVA HVKVMAASYV  180
PSESDIPEDS TVEAPMTINI PYGLYRGAQE PSDSYWSSRG MNITFPVSLP KAAEGHNGNG  240
LPSSMAPRKR RKKWSAEEDE ELIAAVKRHG EGSWALIAKE EFEGERTPSQ LSQRWGAIRR  300
RCDTSNTSTQ TGLQRTEAQM AANRALSLAV GNRVPSKKLA VGTPPMPSSG TTTGAQANGA  360
NSGSTLQSQQ KSQPQVQALP RATTPAPTVK SRVPAKKTTT NSTSRAALVT ANSVAAAACM  420
SGLATAVSVP KTEPGKNAVS VLVPKVEPVK TASTASLPRS SGISSALNAE PVKTASAVSV  480
PRPLGIISGP KAESVKTAAS AASLLRPSGI ISAPKAEPVK TATSAASRPS GIQSAPKAEP  540
VKPAASAASL PRPPGSISAP MAEPVKTAPA ASVPRPSNIL SAPMAEPVKT GPAASVPRPS  600
NILSAPKADP VKSVSATVSN TKAFGPSNLR HAVNGSPNHT ISSSPSNKPS LMTPLSKGST  660
IQNNSVPPSF ASSRLVATQK VPAATLMPQK PSVGAALNAF SKPVGVQKEQ TQGNRASPLV  720
TTTLPANKTF PTNSVISTSK VVATKVETPP SLMPKKNQVV DSCIDKSSLD KPPEKESSST  780
TASPLVAATA ESKSKDEASN RESQHVATVT GTRQKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g053760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511098.10.0PREDICTED: mucin-5AC-like isoform X1
TrEMBLA0A178WGD30.0A0A178WGD3_ARATH; Uncharacterized protein
STRINGXP_010511098.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein