PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g053730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 735aa    MW: 81962 Da    PI: 8.4012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g053730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06260281525
                     --SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartG.tCkyGdrCkFaH 25 
                     +Crffa++  +C+ G++C+F+H
  Csa03g053730.1 260 PCRFFAQGSgYCRNGNNCRFSH 281
                     7******669************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15255285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MSGSGRKRVS KWDTKEEDTQ HPSGNDYPGK LGFRDNDPEH ARFYPESNGR NGSRRAGPDD  60
DGDEHLKPRQ HSGEAWPSRS RVSHDDGDAM MGYYDDPRNS SEQDESRQQY FRQSASKDRA  120
RTRRSGSRSN SRSRSRSPSQ RVRRDGGGSY DRHKTRARVS PRSGREFDGR HNRAGDYDWD  180
GSNRKTRDTK YYTEDSREQQ PIRVGGRTDY SSDFPEDNTN SRRETSDPIS RNYRNEAGRD  240
RETHRRDAPE GEFHRSSNIP CRFFAQGSGY CRNGNNCRFS HHGAPSARGS PERKPQDEMY  300
SRHDNNNNSG TTERMRNSHR WNDVERSDAR KSNEVEISRV SKGMSDAKGN NSSWIDDMEM  360
SPDWNYGVKT VMKPEEHGSI SQSSQSQVLK DASAPAYEHD VASIAQQDGN RRTVGMFTTV  420
GEKTVASSHH NNFINNLATS APPVQAFNQN TENHIAVPYQ STPLAVGGSQ VLLPAATNLP  480
GGLNSSNPEN GNALNNVSRE ELNHISNISA SLAQFFGNGQ PKPIPIPNLH STLNPKQAMQ  540
VPEVYGVKEQ SSHTQSDFPS NNTIHIGGVP AVPALQIHNS DAQQVRIPEN LVSLAVNPKA  600
SSEENRDKKT DEEAGKKPDG KKTGEEEDED AEEEEDDGAG DENNKKEKDP KGMRAFKFAL  660
VEIVKELLKP AWKEGGMNKD AYKNIVKKVV DKVTGAIQSG NIPQTQEKID HYLSASKPKL  720
TKLVQAYVSK VKKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g053730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500425.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
RefseqXP_010500426.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
SwissprotQ9LIH51e-171C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLR0GVC10.0R0GVC1_9BRAS; Uncharacterized protein
STRINGXP_010500425.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-18C3H family protein