PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03g052940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 94aa MW: 10241.7 Da PI: 9.6404 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.3e-07 | 10 | 36 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++ tG C+ +Ck++H++ Csa03g052940.1 10 PGKPECGYYLITGNCNQEKKCKYHHPK 36 5789*********************96 PP | |||||||
2 | zf-CCCH | 29.3 | 1.5e-09 | 58 | 81 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++f+r+G Ck G+ CkF H+ Csa03g052940.1 58 QAVCPHFSRFGLCKSGPACKFDHS 81 689********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.3E-4 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.615 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-5 | 13 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-7 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-7 | 58 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 60 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MSDKKLPERP GKPECGYYLI TGNCNQEKKC KYHHPKNITP IEPGLALNDN GLPLRPNQAV 60 CPHFSRFGLC KSGPACKFDH STKPSSSSSS ARK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03g052940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019099429.1 | 3e-63 | PREDICTED: zinc finger CCCH domain-containing protein 13-like | ||||
Swissprot | Q3ECU8 | 7e-41 | C3H13_ARATH; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | R0GT25 | 1e-43 | R0GT25_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306053.1 | 2e-44 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48195.1 | 7e-43 | C3H family protein |