PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g052940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 94aa    MW: 10241.7 Da    PI: 9.6404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g052940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-071036127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++ tG C+   +Ck++H++
  Csa03g052940.1 10 PGKPECGYYLITGNCNQEKKCKYHHPK 36
                    5789*********************96 PP
2zf-CCCH29.31.5e-095881326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++ C++f+r+G Ck G+ CkF H+
  Csa03g052940.1 58 QAVCPHFSRFGLCKSGPACKFDHS 81
                    689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.3E-4936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615937IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-51136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-51336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-75381IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0985583IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-75881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-46082IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSDKKLPERP GKPECGYYLI TGNCNQEKKC KYHHPKNITP IEPGLALNDN GLPLRPNQAV  60
CPHFSRFGLC KSGPACKFDH STKPSSSSSS ARK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g052940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019099429.13e-63PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU87e-41C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT251e-43R0GT25_9BRAS; Uncharacterized protein
STRINGXP_006306053.12e-44(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.17e-43C3H family protein