PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g038710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 33680.8 Da PI: 7.3504 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.4e-06 | 138 | 157 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Csa03g038710.1 138 FSCHVCFKTFNRYNNLQMHM 157 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.59E-5 | 119 | 160 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 138 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.08E-5 | 202 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MESPQYEISS SSSSEKPRNH FQPLDLFPNL NQNSCNNTLI EPLPLIDRIN LNSNPNPLYE 60 DEGEEEEEEE EDDVEVDVDL HIGLPGFGKS GNGAKQPKKR NGKEIVTYDA GKDIENEVSG 120 KAYWIPAPEQ ILIGFTHFSC HVCFKTFNRY NNLQMHMWGH GSQYRKGPES LKGTQPRAML 180 GIPCYCCVEG CRNHIDHPRS KPLKDFRTLQ THYKRKHGHK PYSCRICGKL LAVKGDWRTH 240 EKNCGKRWVC VCGSDFKHKR SLKDHVKAFG TGHGPYPTGL FEEQASNSSV SETLFF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g038710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF190298 | 0.0 | AF190298.1 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500011.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 1 | ||||
Swissprot | Q8VWG3 | 0.0 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | Q700E7 | 0.0 | Q700E7_ARATH; At1g34790 | ||||
STRING | XP_010500011.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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