PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g018370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 236aa    MW: 26853.1 Da    PI: 6.3973
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g018370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.22.8e-112446224
         G2-like  2 prlrWtpeLHerFveaveqLGGs 24
                    prlrWtpeLH++Fv+av+ LGG+
  Csa03g018370.1 24 PRLRWTPELHRSFVHAVDLLGGQ 46
                    8*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-102069IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRCGRSSDG GIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYSQC IGDPESVFLG  60
NQKRVLHHLQ EEEEDKTMKK IIFMTTCLYT QGMIVFWVFT LLTLENRREQ TSATDNDDDD  120
FLNIMNMERT KTFAGNGESI KFQSHHFLEA ESRKTNCKYT WRENELEGEA EELSLSLSLN  180
HPQNNRQRWR SNATSSLSET SDAVSSSSAP FIFRDCFASS KIDLNLNLSF SLLRS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g018370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496263.12e-99PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
RefseqXP_010496269.12e-99PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D97e-79MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLD7KBM43e-90D7KBM4_ARALL; DNA binding protein
STRINGXP_010496263.19e-99(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.19e-71G2-like family protein