PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g070160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 737aa    MW: 80243.3 Da    PI: 4.9397
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g070160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.37.3e-232074156
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                    k+++rW +eL ++F+ea+++L G  kA Pkti e+m+vkg+t++h++SHLQkYR +
  Csa02g070160.1 20 KTKIRWENELQQKFLEAIDHL-GLRKAMPKTIQEFMNVKGITRSHIASHLQKYRKH 74
                    689******************.9*******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-221778IPR009057Homeodomain-like
PROSITE profilePS5129412.3461776IPR017930Myb domain
SuperFamilySSF466891.7E-151877IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-232074IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MIASTISSNG DNSQGRRPKK TKIRWENELQ QKFLEAIDHL GLRKAMPKTI QEFMNVKGIT  60
RSHIASHLQK YRKHLKRLKQ KAKRAAMAKI INRKLTISAS ASASASSGVL DLQGTFKCAQ  120
LNMDDLFQSQ LGDGVGQSSL ILNKSASRNY MMQQTRSNLL PVGGGRGYSS GVLPLNNEMR  180
SFSATPQVSR VPVLGQYGNA YGAGRVDGNA YGSPGGSLAA MNLDVNNNNM SDPILPSTFG  240
KNDVYNAGIN TTEYIDLTGH GGARFNGSLG ENVGTMNNNM TSHGSSTSRL SSPLSSFFAS  300
EDRVQRNLNA QLDGLIPILE SMSVCNDDIG NTVNSQFDQN QHKGQVSAGN SGLSNDVPEG  360
SATSNSKFDH LLKQMGVGDS ESSNDALLEN IVNNWSNFNN YQGQVSAGDH ELSNTALLQK  420
FTNWSFNNYQ GQVGAGNPEL SNNVLLEKNA IDNWNVNNHQ YQVGAGNPEL FNNVLLEGNA  480
INNWSFNNYQ HQGQVSDGNP NLPNGIALGE NVINNWSYNH QGQVSAGNFG LSNDILLEGN  540
AINNWSFNNY QSQVNVGNYE MANGVFQNAF GNGSFDIHQG QVNAGYPEFA KNALFERSNW  600
NFGNVNDNPT EKTFNSVDAN SKMYIPNPGM NAITQEEQSR NEEALNYLTV NSEMYLPTPD  660
MNAINQEQGS DESTLNSIAA SSSEMRIPSP TPDISTRNLE KGVAPLPEVP LTPIDQLDWT  720
TEGDCMNFMI DIDDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-151978463ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g070160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095677.10.0PREDICTED: uncharacterized protein DDB_G0283357-like
STRINGXP_010477928.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62110.14e-38G2-like family protein